←Back to structures

OP341626.1__UYL93937.1__PK35_gp45__00045

Bact-Vir

OP341626.1__UYL93937.1__PK35_gp45__00045

Identity

Accession:
OP341626 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Geobacillus_phage_vB_GthS_PK3.5

TaxID: 2985564

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-141
PDB
Domain cluster: rep: ON041214.1__UOL51140.1__X__00056__D24-162
D2 high residues 180-260
PDB
Domain cluster: rep: KJ094022.1__AHL18707.1__LP030-3_001__00001__D2-63
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07261.17 best DnaB_2 79.8 1.50e-22 87.6% 97.3%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.95 74.0 7.59e-01 80.2% 97.4%
2zc2A00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.91 76.0 7.93e-01 87.7% 98.7%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 51.0 5.07e-01 79.0% 85.5%
1ufzA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 43.0 4.92e-01 72.8% 93.1%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 46.0 4.51e-01 79.0% 87.9%
1oaiA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 38.0 4.24e-01 75.3% 84.7%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.60 43.0 4.23e-01 76.5% 78.4%
2x49A03 1.10.8.540 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 0.59 47.0 4.60e-01 93.8% 80.0%
3oz2A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.34e-01 98.8% 78.1%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.53 30.0 2.81e-01 97.5% 43.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3114 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.95 72.0 7.61e-01 79.0% 100.0%
3989035 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.95 88.0 8.28e-01 97.5% 86.3%
4498620 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.92 73.0 7.84e-01 82.7% 98.6%
4048400 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.92 82.0 8.06e-01 93.8% 91.8%
3587918 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.92 86.0 8.09e-01 100.0% 89.5%
5052347 3317.1.1.0 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.65 43.0 4.94e-01 71.6% 98.2%
3581816 148.1.1.5 ↗ alpha arrays › Histone-like › Histone-related › Histone › TFIID-18kDa 0.59 49.0 3.58e-01 93.8% 97.9%
3259425 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.57 43.0 4.10e-01 80.2% 81.1%
5047378 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 46.0 3.75e-01 97.5% 100.0%
3237526 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.54 39.0 3.92e-01 80.2% 74.1%
4677227 102.1.1.6 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Methyltransf_5 0.52 36.0 3.27e-01 71.6% 53.6%
4030112 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.50 40.0 2.67e-01 87.7% 97.2%