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WPH65839.1

Arc-Vir

OP374082__WPH65839.1__HJTV4-gp16__00015

Identity

Accession:
OP374082 ↗
Protein ID:
WPH65839.1 ↗
Kingdom:
archaea

Quality

94.2 mean pLDDT

Taxonomy

Haloarchaeal_virus_HJTV-4

TaxID: 3075134

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-108
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b34A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.73 53.0 5.86e-01 83.3% 95.3%
5zi7A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.72 53.0 5.88e-01 83.3% 96.5%
1h19A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.71 58.0 6.15e-01 97.2% 96.9%
6rqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.69 64.0 4.80e-01 100.0% 87.4%
3g5cA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.66 55.0 4.43e-01 90.7% 72.0%
3pt3B00 3.30.2410.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain 0.61 51.0 5.36e-01 92.6% 100.0%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 25.0 3.21e-01 70.4% 66.2%
3vr0A00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.58 44.0 3.45e-01 81.5% 85.2%
4je3B00 3.10.20.720 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 27.0 3.12e-01 88.9% 58.4%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 50.0 3.80e-01 99.1% 93.1%
4wy5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 49.0 3.55e-01 100.0% 80.3%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.55 27.0 2.87e-01 75.0% 49.5%
3d59A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 3.36e-01 100.0% 86.0%
6kmoB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 3.37e-01 99.1% 76.5%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.38e-01 99.1% 75.5%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 45.0 3.28e-01 99.1% 74.6%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.61e-01 88.0% 76.9%
3wz2B00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.51 43.0 3.45e-01 94.4% 84.2%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 41.0 3.23e-01 89.8% 98.4%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929032 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.82 61.0 5.30e-01 80.6% 53.5%
4020944 2498.1.1.12 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M4,Peptidase_M4_C 0.79 63.0 4.19e-01 83.3% 33.7%
3519421 2498.1.1.62 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.78 53.0 4.54e-01 70.4% 51.2%
4960523 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.77 54.0 5.33e-01 72.2% 73.9%
5055672 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.76 52.0 5.32e-01 70.4% 77.1%
3592165 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.73 65.0 4.80e-01 99.1% 94.7%
4937460 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.73 51.0 5.25e-01 73.1% 99.0%
3960954 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.72 62.0 5.48e-01 100.0% 64.5%
4969797 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.71 50.0 4.96e-01 75.0% 68.7%
3934320 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.71 65.0 4.78e-01 100.0% 80.0%
4951792 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.71 65.0 4.87e-01 100.0% 86.3%
3405450 2498.1.1.62 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 0.71 51.0 4.03e-01 75.0% 42.3%
3600552 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 64.0 4.71e-01 100.0% 79.3%
3247306 2498.1.1.5 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N 0.69 48.0 2.94e-01 72.2% 25.4%
3956317 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.69 63.0 4.68e-01 100.0% 82.3%
3959726 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.69 63.0 4.73e-01 100.0% 85.5%
3991252 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.66 55.0 4.70e-01 93.5% 56.5%
4851730 2498.1.1.4 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Reprolysin 0.66 55.0 4.42e-01 90.7% 69.8%
3686613 261.1.1.0 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.62 55.0 4.96e-01 99.1% 95.3%
4959819 2007.1.13.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › DUF7714 0.62 49.0 4.22e-01 84.3% 100.0%
4332917 2498.1.1.41 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M60 0.60 54.0 3.90e-01 100.0% 44.3%
3925690 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 26.0 3.10e-01 99.1% 56.0%
4257797 212.1.1.17 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV 0.59 50.0 4.74e-01 91.7% 90.0%
4977114 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.58 44.0 3.51e-01 81.5% 80.9%
5075824 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.56 43.0 3.41e-01 82.4% 86.0%
4561608 230.5.1.3 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › FliL 0.56 41.0 4.30e-01 80.6% 85.0%
3728856 171.1.1.9 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.54 39.0 3.12e-01 76.9% 86.7%
5032583 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 42.0 3.69e-01 84.3% 90.0%
164228 2.1.1.54 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3217 0.53 37.0 3.82e-01 97.2% 76.9%
5054370 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.52 43.0 3.49e-01 92.6% 83.9%
4055336 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.50 41.0 3.23e-01 88.0% 70.3%
D2 medium residues 109-188
PDB
Domain cluster: rep: IMGVR_UViG_3300011177_000038-3300011177-Ga0136574_1019181__D4-79