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WPH65882.1

Arc-Vir

OP374082__WPH65882.1__HJTV4-gp60__00058

Identity

Accession:
OP374082 ↗
Protein ID:
WPH65882.1 ↗
Kingdom:
archaea

Quality

68.9 mean pLDDT

Taxonomy

TaxID: 3075134

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-96
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.47e-01 95.4% 93.1%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.67 40.0 4.71e-01 71.3% 86.4%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.29e-01 97.7% 93.1%
1jkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 50.0 4.31e-01 81.6% 85.6%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 5.41e-01 100.0% 97.2%
6jqlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 47.0 3.76e-01 77.0% 83.1%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.64 53.0 4.76e-01 90.8% 89.4%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 4.24e-01 82.8% 86.2%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.63 46.0 4.77e-01 79.3% 95.1%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.62 47.0 4.10e-01 81.6% 93.3%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 36.0 3.88e-01 73.6% 68.0%
4hrzB00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.00e-01 79.3% 74.8%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.34e-01 81.6% 84.0%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.93e-01 81.6% 92.5%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 45.0 3.99e-01 82.8% 92.2%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 38.0 4.34e-01 78.2% 95.0%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 43.0 2.78e-01 80.5% 38.5%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 50.0 3.53e-01 95.4% 50.2%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.59 49.0 4.04e-01 92.0% 81.1%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 4.03e-01 83.9% 93.0%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 45.0 4.08e-01 85.1% 88.8%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 46.0 4.08e-01 86.2% 90.8%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.58 46.0 3.95e-01 85.1% 93.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.58 46.0 4.52e-01 100.0% 80.6%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 4.16e-01 80.5% 97.1%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 42.0 2.80e-01 79.3% 27.8%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.57 48.0 4.01e-01 97.7% 74.1%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 2.91e-01 79.3% 28.9%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 4.45e-01 80.5% 96.8%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 49.0 3.51e-01 96.6% 36.5%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.70e-01 79.3% 84.8%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 3.79e-01 93.1% 65.7%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.56 40.0 3.59e-01 74.7% 93.5%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.97e-01 87.4% 84.4%
3cinA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 42.0 3.97e-01 79.3% 98.1%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 41.0 3.26e-01 87.4% 38.4%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 40.0 3.49e-01 75.9% 98.5%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.78e-01 94.3% 91.2%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.55 45.0 3.79e-01 93.1% 53.4%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 35.0 3.23e-01 92.0% 48.3%
1gr0A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 40.0 4.13e-01 79.3% 97.6%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.54 39.0 3.53e-01 75.9% 95.8%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.00e-01 94.3% 26.5%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 38.0 3.65e-01 80.5% 62.9%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.53 39.0 4.06e-01 78.2% 96.4%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.52 40.0 3.16e-01 82.8% 83.2%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.77e-01 78.2% 94.6%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.77e-01 79.3% 90.5%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.52 39.0 2.94e-01 78.2% 69.5%
6k96B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 37.0 3.67e-01 77.0% 95.9%
4ffgA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 40.0 2.76e-01 83.9% 31.6%
3gm8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.37e-01 71.3% 90.5%
3vr0A00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.51 45.0 3.32e-01 100.0% 81.1%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.51 44.0 3.23e-01 96.6% 52.8%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.69e-01 75.9% 97.7%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 42.0 3.59e-01 93.1% 77.6%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 45.0 4.24e-01 100.0% 84.6%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 39.0 3.78e-01 88.5% 95.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248518 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.68 57.0 5.03e-01 89.7% 78.9%
4523830 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.68 56.0 5.18e-01 89.7% 95.5%
3410370 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.21e-01 96.6% 92.9%
3724576 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.67 49.0 4.47e-01 79.3% 96.7%
3297629 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 49.0 5.13e-01 79.3% 90.0%
3505092 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 45.0 4.32e-01 74.7% 64.0%
3941717 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 48.0 4.82e-01 80.5% 90.9%
5032255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 5.02e-01 89.7% 94.3%
5068089 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.63 47.0 4.30e-01 79.3% 92.2%
3670358 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.63 43.0 4.10e-01 73.6% 61.0%
3943050 274.1.1.51 a+b two layers › Pili subunits › Pili subunits › Pili subunits › PF27121 0.61 46.0 3.63e-01 79.3% 74.9%
4001388 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 51.0 3.58e-01 94.3% 39.7%
3882543 243.3.1.4 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.60 47.0 4.56e-01 82.8% 96.8%
3501156 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 45.0 4.21e-01 80.5% 85.5%
3267804 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 54.0 5.16e-01 97.7% 92.0%
4892175 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 45.0 3.91e-01 81.6% 85.9%
4982481 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 4.33e-01 80.5% 88.4%
4937519 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.59 43.0 3.89e-01 77.0% 75.8%
3889571 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.58 45.0 4.12e-01 85.1% 90.2%
4827722 9.13.1.5 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like 0.58 48.0 4.87e-01 90.8% 93.2%
197051 4.1.1.74 beta barrels › SH3 › SH3 › SH3 › DUF3247 0.58 46.0 4.52e-01 100.0% 80.6%
3483566 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.30e-01 90.8% 71.4%
4028738 5.1.4.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel 0.57 42.0 2.87e-01 79.3% 26.6%
3183677 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.57 43.0 3.98e-01 80.5% 80.0%
3694763 375.1.1.222 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29994 0.57 43.0 3.72e-01 79.3% 67.7%
4870077 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 43.0 3.83e-01 85.1% 88.3%
3903857 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 47.0 3.00e-01 92.0% 44.8%
3450141 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.56 42.0 4.08e-01 80.5% 91.0%
3279764 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 40.0 4.41e-01 74.7% 100.0%
4955075 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.56 39.0 4.18e-01 71.3% 100.0%
3231301 4.1.1.85 beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.55 46.0 4.25e-01 92.0% 73.0%
3940546 4.1.1.85 beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.55 46.0 4.23e-01 92.0% 73.9%
3472685 3324.1.1.2 extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.55 49.0 3.47e-01 100.0% 42.2%
3645444 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.47e-01 72.4% 95.8%
3864913 218.1.1.2 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.55 38.0 3.18e-01 72.4% 96.1%
2553892 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 42.0 3.87e-01 85.1% 96.7%
3184850 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.54 47.0 3.28e-01 97.7% 86.8%
5055392 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 47.0 4.07e-01 100.0% 82.1%
4466001 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 40.0 3.49e-01 87.4% 51.1%
3921679 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.75e-01 79.3% 88.2%
5028974 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.54 47.0 4.21e-01 97.7% 75.8%
5022744 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.53 46.0 4.06e-01 98.9% 69.6%
4262043 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 40.0 4.17e-01 82.8% 87.5%
3722822 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 36.0 2.35e-01 71.3% 16.8%
3301111 331.3.1.25 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.53 38.0 3.26e-01 78.2% 48.1%
None 0.53 45.0 3.10e-01 95.4% 42.2%
3324317 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.52 38.0 2.64e-01 79.3% 26.6%
3663984 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.52 44.0 3.50e-01 98.9% 60.0%
3190995 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.51 45.0 3.63e-01 100.0% 50.9%
4152544 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 40.0 3.42e-01 85.1% 89.7%
4958552 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 3.38e-01 82.8% 58.3%
3962269 2004.1.1.204 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 2.39e-01 78.2% 37.2%
4344452 223.3.1.3 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.51 41.0 3.05e-01 90.8% 82.9%
376 2.1.1.20 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Phage_DNA_bind 0.50 36.0 3.67e-01 75.9% 96.6%
4012953 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 44.0 3.72e-01 100.0% 58.0%