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OP375635.1__UYE90950.1__X__00031

Bact-Vir

OP375635.1__UYE90950.1__X__00031

Identity

Accession:
OP375635 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VaS_L1

TaxID: 2981540

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 56-150
PDB
Domain cluster: rep: OL614104.1__UIS74591.1__X__00032__D2-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10765.15 best Phage_P22_NinX 36.5 7.30e-09 81.0% 64.3%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 42.0 4.91e-01 89.5% 94.0%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 43.0 4.67e-01 96.8% 89.9%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 41.0 4.17e-01 88.4% 74.5%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 41.0 4.23e-01 88.4% 78.3%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 4.47e-01 84.2% 81.2%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 44.0 4.42e-01 85.3% 86.2%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 32.0 3.77e-01 93.7% 87.1%
7ob9B02 3.90.1800.10 Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain 0.52 31.0 3.05e-01 72.6% 52.9%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.52 43.0 3.21e-01 88.4% 45.3%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 35.0 2.63e-01 71.6% 92.5%
1vloA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 40.0 3.62e-01 88.4% 78.6%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 45.0 3.50e-01 100.0% 79.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3333293 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 42.0 4.77e-01 87.4% 84.0%
3788141 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 47.0 5.24e-01 100.0% 96.0%
5023929 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 46.0 4.82e-01 83.2% 84.7%
3495949 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 44.0 4.52e-01 90.5% 75.6%
4048167 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 44.0 5.06e-01 90.5% 98.6%
4203072 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.62 44.0 4.29e-01 87.4% 66.7%
3273505 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 45.0 4.87e-01 86.3% 88.7%
4319496 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 42.0 4.88e-01 88.4% 95.7%
3735697 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.61 45.0 4.95e-01 83.2% 91.3%
3184900 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.60 44.0 4.23e-01 76.8% 75.5%
3501861 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 48.0 4.65e-01 100.0% 76.2%
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 43.0 4.48e-01 95.8% 80.0%
1108069 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 43.0 4.67e-01 96.8% 89.9%
1168794 330.1.1.8 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dsRBD 0.59 43.0 4.36e-01 77.9% 75.8%
4208191 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 45.0 4.84e-01 98.9% 96.2%
3473362 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 45.0 3.98e-01 85.3% 59.3%
3676562 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 43.0 3.42e-01 81.1% 75.1%
3494433 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 44.0 4.03e-01 83.2% 62.9%
4993189 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 29.0 3.55e-01 83.2% 76.7%
3236988 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.56 38.0 4.07e-01 98.9% 81.2%
3710329 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 42.0 4.05e-01 86.3% 68.2%
3432658 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 43.0 4.32e-01 95.8% 82.1%
3617638 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 42.0 4.11e-01 81.1% 73.3%
4418585 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 42.0 4.55e-01 96.8% 97.5%
4467977 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.53 45.0 4.33e-01 87.4% 83.8%
3928223 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 41.0 4.20e-01 89.5% 85.6%
3222974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 40.0 3.95e-01 98.9% 76.2%
3493131 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 40.0 4.00e-01 88.4% 79.0%
1731086 295.1.1.9 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Imm42 0.50 39.0 3.44e-01 87.4% 94.2%