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OP375635.1__UYE90974.1__X__00055

Bact-Vir

OP375635.1__UYE90974.1__X__00055

Identity

Accession:
OP375635 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_VaS_L1

TaxID: 2981540

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-46
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.75 63.0 6.27e-01 100.0% 97.5%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.51e-01 97.4% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.07e-01 97.4% 73.0%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.70 51.0 3.86e-01 82.1% 83.2%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.68 50.0 3.76e-01 84.6% 80.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.03e-01 100.0% 93.6%
1f60A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 53.0 3.93e-01 100.0% 67.6%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 53.0 4.52e-01 100.0% 98.6%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 53.0 3.99e-01 100.0% 63.7%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 52.0 3.72e-01 100.0% 31.4%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.62 51.0 4.10e-01 100.0% 56.2%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 53.0 4.07e-01 100.0% 61.7%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.70e-01 100.0% 76.6%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 50.0 3.74e-01 100.0% 65.5%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 45.0 3.22e-01 82.1% 86.2%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.59 48.0 3.51e-01 100.0% 41.5%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 48.0 3.88e-01 100.0% 82.6%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 44.0 3.30e-01 100.0% 62.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.15e-01 100.0% 30.7%
7vcnA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.54 41.0 3.18e-01 100.0% 35.0%
2g3mF01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 38.0 2.72e-01 97.4% 21.7%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 38.0 2.99e-01 82.1% 37.3%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.00e-01 100.0% 96.0%
3kuzB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.14e-01 100.0% 90.8%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.50 40.0 3.01e-01 100.0% 45.2%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 41.0 2.82e-01 100.0% 66.3%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4867130 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.80 68.0 4.91e-01 100.0% 73.9%
3971219 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.77 66.0 3.99e-01 100.0% 16.0%
5009412 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.77 65.0 3.98e-01 100.0% 62.3%
3619623 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.75 56.0 4.75e-01 82.1% 76.9%
3798287 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 56.0 4.21e-01 82.1% 88.4%
3942089 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.74 61.0 3.77e-01 100.0% 15.7%
5009595 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.74 57.0 3.44e-01 100.0% 13.3%
2773560 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.73 58.0 5.11e-01 100.0% 92.5%
3214527 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 54.0 3.85e-01 84.6% 74.4%
3529465 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.72 52.0 3.91e-01 82.1% 80.0%
3230106 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 53.0 4.02e-01 84.6% 89.0%
3226939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 56.0 4.35e-01 100.0% 76.0%
4620172 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.66 55.0 3.31e-01 100.0% 66.2%
3192436 220.1.1.129 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Swc3 0.66 54.0 3.59e-01 100.0% 48.6%
3598857 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 55.0 3.97e-01 100.0% 60.8%
3888996 101.1.9.4 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.65 48.0 3.79e-01 87.2% 88.4%
3608683 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.65 55.0 3.86e-01 100.0% 56.2%
3400699 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 46.0 3.56e-01 84.6% 89.5%
3699413 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.63 53.0 3.92e-01 100.0% 66.1%
3252862 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 44.0 3.20e-01 76.9% 50.9%
5024153 1.1.8.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.61 51.0 3.89e-01 100.0% 58.0%
4494270 2498.1.1.2 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin 0.60 48.0 2.98e-01 94.9% 16.4%
3453949 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 49.0 2.96e-01 100.0% 17.2%
3983524 274.1.1.13 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.59 51.0 3.47e-01 100.0% 56.4%
3823449 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 48.0 2.93e-01 100.0% 18.3%
5031820 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 46.0 3.42e-01 100.0% 90.0%
4946925 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 47.0 3.90e-01 100.0% 62.7%
3479721 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.51 38.0 2.99e-01 87.2% 38.5%
2841943 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 40.0 2.88e-01 100.0% 38.7%
3477283 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 38.0 3.03e-01 89.7% 41.0%
D2 medium residues 63-118
PDB
Domain cluster: rep: OX241575.1__CAH9016878.1__VP120E341_P0092__00092__D86-141
D3 medium residues 121-165
PDB