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OP380492.1__UXR28741.1__X__00009

Bact-Vir

OP380492.1__UXR28741.1__X__00009

Identity

Accession:
OP380492 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bacillus_phage_Nachito

TaxID: 2982875

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 4.26e-01 100.0% 51.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 46.0 5.03e-01 100.0% 85.2%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.14e-01 100.0% 47.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.17e-01 100.0% 52.8%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 53.0 4.31e-01 100.0% 57.5%
1nvpD02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.59 39.0 4.43e-01 80.6% 100.0%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 46.0 4.24e-01 89.6% 97.8%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.69e-01 100.0% 52.5%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.84e-01 88.1% 88.2%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.83e-01 97.0% 79.4%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 41.0 3.63e-01 94.0% 54.8%
1w0pA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 45.0 2.87e-01 97.0% 24.7%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.74e-01 95.5% 78.9%
1arbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 45.0 3.71e-01 94.0% 72.1%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 43.0 3.27e-01 92.5% 70.9%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.52 40.0 3.39e-01 86.6% 83.2%
3qdhA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.55e-01 91.0% 93.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 3.68e-01 94.0% 80.4%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.82e-01 94.0% 23.6%
7s5oA01 3.50.70.20 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › Cytochrome P460 0.50 36.0 2.90e-01 77.6% 51.4%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.50 43.0 3.76e-01 100.0% 67.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 5.01e-01 100.0% 93.8%
4941652 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 53.0 4.37e-01 100.0% 60.0%
3229356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.51e-01 100.0% 63.8%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.78e-01 100.0% 88.6%
3743024 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.59 44.0 3.62e-01 80.6% 74.4%
3594328 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.53e-01 100.0% 71.1%
3285597 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 53.0 3.12e-01 100.0% 40.2%
5035282 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 49.0 4.12e-01 100.0% 60.0%
3457651 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 3.04e-01 88.1% 32.3%
4215369 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 47.0 3.99e-01 100.0% 60.0%
3257790 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 43.0 3.62e-01 86.6% 82.4%
3647596 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 43.0 3.27e-01 86.6% 79.4%
3214839 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 38.0 2.95e-01 73.1% 59.4%
3814719 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 43.0 3.53e-01 88.1% 82.3%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.54 45.0 3.78e-01 100.0% 56.9%
3827979 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 42.0 3.34e-01 85.1% 57.6%
3808831 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.54 42.0 3.30e-01 88.1% 73.5%
5039070 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.54 44.0 3.65e-01 91.0% 65.8%
3550168 4.8.1.27 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › CUL7_CUL9_N 0.53 46.0 4.24e-01 100.0% 81.1%
4979002 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 45.0 3.97e-01 100.0% 74.3%
4308711 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.52 42.0 3.40e-01 92.5% 85.0%
3319754 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.52 41.0 3.23e-01 89.6% 63.1%
4014819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 41.0 2.94e-01 94.0% 35.2%
3418938 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.51 39.0 3.00e-01 88.1% 80.6%
4032056 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.51 43.0 3.29e-01 98.5% 50.3%