←Back to structures

OP380492.1__UXR28762.1__X__00030

Bact-Vir

OP380492.1__UXR28762.1__X__00030

Identity

Accession:
OP380492 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bacillus_phage_Nachito

TaxID: 2982875

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-52
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 49.0 3.72e-01 83.7% 83.9%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 3.70e-01 100.0% 39.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 55.0 4.51e-01 100.0% 53.3%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.61 41.0 3.91e-01 100.0% 57.4%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.60 40.0 3.76e-01 100.0% 53.0%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 52.0 3.87e-01 100.0% 40.9%
2dtgE06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 3.89e-01 100.0% 44.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 50.0 4.13e-01 100.0% 57.3%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.59 39.0 3.47e-01 100.0% 43.6%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 3.63e-01 100.0% 36.9%
5escA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 3.83e-01 100.0% 45.4%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.58 47.0 4.73e-01 100.0% 90.0%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 50.0 3.78e-01 100.0% 43.5%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 49.0 3.78e-01 100.0% 45.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 49.0 3.44e-01 100.0% 29.3%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.81e-01 100.0% 47.9%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 49.0 3.37e-01 100.0% 47.5%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 49.0 3.31e-01 100.0% 29.6%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 48.0 3.64e-01 100.0% 43.2%
3hrpA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.55e-01 87.8% 94.7%
6grsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.90e-01 100.0% 51.6%
3rqtA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 38.0 2.49e-01 73.5% 69.0%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 3.52e-01 100.0% 38.2%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 48.0 3.42e-01 100.0% 34.2%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 3.29e-01 100.0% 32.8%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.55 44.0 3.74e-01 100.0% 69.1%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.47e-01 98.0% 44.6%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.22e-01 100.0% 30.9%
2lc1A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 44.0 3.65e-01 100.0% 94.0%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 47.0 4.09e-01 100.0% 98.7%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.43e-01 100.0% 40.7%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 46.0 4.28e-01 100.0% 87.5%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.53 42.0 3.37e-01 100.0% 41.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.30e-01 95.9% 93.8%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.33e-01 100.0% 46.2%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 42.0 3.83e-01 98.0% 83.3%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.51 43.0 3.12e-01 100.0% 34.4%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 44.0 3.11e-01 100.0% 50.6%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.51 43.0 2.80e-01 100.0% 23.8%
3zc4F02 2.30.30.1260 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.42e-01 79.6% 86.2%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 35.0 2.19e-01 85.7% 11.5%
3a21A03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.33e-01 100.0% 46.5%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3899825 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.69 44.0 3.28e-01 100.0% 25.6%
4241460 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.67 55.0 3.92e-01 100.0% 32.6%
3845669 11.1.1.396 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Anth_Ig 0.63 52.0 4.16e-01 100.0% 47.4%
3236126 10.10.1.1 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.61 53.0 3.98e-01 100.0% 71.2%
4939856 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 51.0 3.52e-01 95.9% 52.9%
3344073 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.59 44.0 2.96e-01 89.8% 21.7%
5071918 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 51.0 3.76e-01 100.0% 40.0%
4472438 220.4.1.10 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › DUF3586 0.59 51.0 4.32e-01 100.0% 96.4%
4931996 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 50.0 3.73e-01 100.0% 40.6%
5018578 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 50.0 3.76e-01 100.0% 41.5%
304148 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 50.0 3.78e-01 100.0% 43.5%
4938049 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 42.0 3.55e-01 100.0% 44.7%
5047765 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 50.0 3.76e-01 100.0% 44.0%
4976256 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 49.0 3.63e-01 100.0% 40.0%
2706608 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 49.0 3.70e-01 100.0% 42.9%
3238303 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 3.86e-01 100.0% 60.0%
3638041 72.1.1.0 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.57 43.0 3.60e-01 100.0% 45.6%
4932075 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 48.0 3.64e-01 100.0% 42.3%
3860932 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 49.0 3.88e-01 100.0% 48.6%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.57 49.0 4.40e-01 100.0% 78.6%
4214410 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.56 49.0 4.29e-01 100.0% 82.7%
4974640 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 48.0 3.53e-01 100.0% 41.7%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.11e-01 100.0% 81.2%
5003403 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.55 49.0 4.45e-01 100.0% 89.2%
5047766 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 47.0 3.64e-01 100.0% 47.0%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.34e-01 100.0% 78.1%
4032111 73.1.1.7 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FtsK_SpoIIIE_N 0.54 46.0 3.99e-01 98.0% 97.5%
4067132 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 3.69e-01 100.0% 44.5%
4525110 1.1.13.65 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Mycop_pep_DUF31 0.54 45.0 3.32e-01 100.0% 51.4%
4059006 9.9.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.53 46.0 3.45e-01 100.0% 96.0%
2491402 2008.1.1.47 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_Bpu10I 0.53 39.0 2.47e-01 81.6% 23.2%
1031129 11.1.4.26 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4458 0.53 42.0 3.38e-01 100.0% 41.7%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.53 45.0 4.15e-01 100.0% 89.2%
5025279 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 35.0 2.83e-01 71.4% 90.4%
3913510 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.31e-01 100.0% 53.6%
4930203 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.52 42.0 4.12e-01 100.0% 85.5%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.52 46.0 3.15e-01 100.0% 46.7%
5030093 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.52 45.0 3.93e-01 100.0% 66.7%
3718212 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.52 46.0 2.73e-01 100.0% 15.6%
4947355 284.1.1.31 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GCD14 0.52 44.0 4.10e-01 100.0% 86.2%
3975284 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.51 39.0 2.96e-01 89.8% 39.3%
3536857 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.51 42.0 3.03e-01 100.0% 29.7%
3881277 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.51e-01 100.0% 50.0%
4976717 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 40.0 3.13e-01 100.0% 38.5%
4601385 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.51 38.0 3.07e-01 89.8% 45.0%
4949072 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 41.0 3.06e-01 100.0% 36.6%