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OP380492.1__UXR28892.1__X__00161

Bact-Vir

OP380492.1__UXR28892.1__X__00161

Identity

Accession:
OP380492 ↗
Kingdom:
phage

Quality

73.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bhpA00 3.30.1350.10 Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like 0.54 39.0 4.05e-01 94.1% 93.3%
2bayE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 41.0 3.95e-01 84.3% 76.3%
6jmtB01 1.10.220.150 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein 0.53 39.0 3.31e-01 98.0% 42.5%
1pc3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 41.0 3.03e-01 90.2% 32.6%
2qmxA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 42.0 3.59e-01 96.1% 84.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3178301 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 46.0 3.66e-01 86.3% 35.0%
3573611 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 40.0 4.56e-01 80.4% 100.0%
3859106 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 49.0 5.17e-01 84.3% 93.3%
3990579 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.57 44.0 3.51e-01 86.3% 45.7%
3578181 355.1.1.0 few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.55 38.0 3.85e-01 94.1% 74.0%
4272127 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 42.0 3.47e-01 86.3% 47.4%
3531184 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.54 42.0 3.58e-01 86.3% 52.9%
3708636 7060.1.1.1 alpha arrays › ELMO domain › ELMO domain › ELMO domain › ELMO_CED12 0.52 36.0 2.42e-01 100.0% 16.1%
D2 high residues 211-252
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26856.1 best Phage_SPO1_gp51 55.1 1.30e-14 92.9% 27.5%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.62 45.0 3.42e-01 81.0% 91.1%
2kngA01 4.10.320.10 Few Secondary Structures › Irregular › Dihydrolipoamide Transferase › E3-binding domain 0.61 45.0 4.55e-01 100.0% 79.1%
3ripA02 1.20.120.1900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain 0.61 45.0 2.68e-01 78.6% 16.5%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.61 52.0 3.53e-01 100.0% 29.9%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 50.0 4.19e-01 95.2% 66.7%
3rs1A00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.58 41.0 3.03e-01 76.2% 74.6%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.58 48.0 4.10e-01 100.0% 65.8%
3m9zA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.57 40.0 2.97e-01 76.2% 78.2%
7jgsG01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.20e-01 100.0% 57.0%
3hsuA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 46.0 2.96e-01 97.6% 68.7%
4rk4A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 47.0 3.22e-01 95.2% 72.5%
6qp2A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 43.0 2.72e-01 90.5% 59.4%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.53 46.0 3.92e-01 95.2% 88.1%
2vuvA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 45.0 3.25e-01 100.0% 63.6%
3s5tA02 3.90.640.20 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase 0.53 45.0 3.45e-01 100.0% 52.0%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.51 36.0 2.87e-01 83.3% 81.1%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211219 209.1.1.14 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.63 48.0 3.08e-01 81.0% 64.3%
4567937 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.60 42.0 4.13e-01 81.0% 66.0%
3594524 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.59 41.0 2.96e-01 76.2% 85.2%
3704546 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.58 45.0 2.67e-01 88.1% 33.7%
D3 medium residues 141-200
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26856.1 best Phage_SPO1_gp51 78.9 5.80e-22 100.0% 42.0%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.73 50.0 5.44e-01 78.3% 93.5%
3l0oA01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.67 48.0 5.13e-01 85.0% 95.9%
3t0yA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 43.0 4.24e-01 86.7% 60.6%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.65 46.0 4.54e-01 85.0% 69.7%
2jnsA01 1.20.1270.220 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 44.0 4.07e-01 75.0% 86.4%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.63 49.0 4.47e-01 90.0% 87.2%
3zdrA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.62 52.0 3.69e-01 100.0% 94.8%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.62 48.0 4.43e-01 85.0% 87.2%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 47.0 4.16e-01 83.3% 78.2%
2kvdA02 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.60 43.0 4.39e-01 80.0% 82.8%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 47.0 4.16e-01 91.7% 91.5%
2yukA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 41.0 3.63e-01 73.3% 61.1%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 46.0 4.03e-01 86.7% 67.0%
3me5A01 1.10.260.140 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.58 39.0 3.92e-01 83.3% 67.2%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 47.0 4.07e-01 93.3% 78.8%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 3.44e-01 100.0% 96.6%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 45.0 3.21e-01 91.7% 82.0%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.55 43.0 3.69e-01 90.0% 93.2%
3swhA01 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.54 47.0 3.46e-01 100.0% 49.7%
4inaA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.18e-01 95.0% 93.9%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.53 42.0 2.95e-01 86.7% 68.7%
2iaiA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.35e-01 91.7% 52.9%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 44.0 3.62e-01 93.3% 90.1%
4f0jA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 2.93e-01 100.0% 33.3%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.05e-01 95.0% 94.8%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.50 42.0 3.34e-01 93.3% 88.8%
4zylB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.50 42.0 3.15e-01 91.7% 95.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3261240 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.80 51.0 5.88e-01 78.3% 100.0%
3440160 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 56.0 6.16e-01 81.7% 100.0%
4428371 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.77 55.0 6.05e-01 88.3% 100.0%
4260463 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.77 52.0 5.76e-01 76.7% 93.3%
3611122 130.1.1.32 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.76 53.0 5.49e-01 88.3% 80.0%
3943133 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.74 49.0 5.44e-01 76.7% 93.3%
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.72 54.0 5.61e-01 85.0% 89.1%
4649575 130.1.1.45 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 0.71 54.0 5.49e-01 88.3% 83.3%
4567937 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.71 54.0 5.73e-01 93.3% 100.0%
3838872 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.71 54.0 5.65e-01 93.3% 90.9%
3881311 130.1.1.32 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.71 50.0 5.49e-01 80.0% 100.0%
4128206 3949.1.1.0 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.70 52.0 5.09e-01 83.3% 73.8%
3528983 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 45.0 5.13e-01 83.3% 100.0%
4320103 3949.1.1.1 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.68 53.0 5.46e-01 85.0% 92.7%
3792066 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 58.0 3.67e-01 100.0% 54.2%
3699818 130.1.1.8 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C 0.66 43.0 4.83e-01 75.0% 91.1%
3714674 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.63 49.0 5.06e-01 90.0% 92.7%
3614169 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.63 48.0 4.84e-01 88.3% 91.7%
3673226 622.2.1.0 alpha bundles › YvfG-like › YvfG-like › YvfG-like 0.62 42.0 4.41e-01 80.0% 76.4%
3235613 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.61 46.0 2.97e-01 85.0% 86.7%
3690457 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.61 47.0 4.72e-01 88.3% 90.0%
3198529 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.60 48.0 3.81e-01 98.3% 80.7%
3347236 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.59 44.0 3.32e-01 78.3% 49.6%
4385657 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.55 44.0 3.32e-01 95.0% 81.1%
3724166 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.55 43.0 4.27e-01 91.7% 98.5%
4961658 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.54 44.0 3.53e-01 95.0% 96.2%
4974579 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.54 42.0 3.02e-01 96.7% 28.1%
3202706 5052.1.1.1 alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.53 44.0 2.68e-01 95.0% 60.5%
3995059 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.52 42.0 2.95e-01 96.7% 88.7%
4014515 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 47.0 3.99e-01 100.0% 65.3%
3173181 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.52 35.0 3.04e-01 93.3% 43.0%
3897328 2003.1.5.111 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Rsm22 0.51 41.0 2.58e-01 90.0% 15.4%
3858558 4207.1.2.5 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › TEX13 0.51 40.0 3.79e-01 88.3% 89.3%