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OP380492.1__UXR28928.1__X__00197

Bact-Vir

OP380492.1__UXR28928.1__X__00197

Identity

Accession:
OP380492 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-112
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 56.0 5.02e-01 89.2% 92.6%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.70 57.0 4.52e-01 92.3% 47.1%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 50.0 4.15e-01 80.0% 79.8%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.67 46.0 4.85e-01 72.3% 96.6%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 36.0 2.96e-01 96.9% 28.2%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.65 55.0 5.03e-01 96.9% 90.9%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 50.0 4.00e-01 84.6% 76.3%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.64 44.0 4.68e-01 72.3% 100.0%
2jobA00 3.30.160.320 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 51.0 4.50e-01 92.3% 60.8%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 52.0 3.33e-01 93.8% 55.8%
3eagA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.62 49.0 3.41e-01 89.2% 33.3%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 48.0 2.89e-01 87.7% 92.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 48.0 3.51e-01 86.2% 41.5%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 53.0 4.24e-01 98.5% 58.5%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.61 50.0 4.56e-01 98.5% 79.2%
3k1lA02 3.30.457.30 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.60 52.0 4.72e-01 98.5% 88.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 50.0 3.94e-01 92.3% 82.1%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 51.0 3.79e-01 96.9% 86.4%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.60 51.0 4.11e-01 100.0% 51.4%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 4.18e-01 93.8% 61.1%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 3.65e-01 73.8% 56.8%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 42.0 3.43e-01 78.5% 37.5%
3md7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 52.0 3.41e-01 100.0% 58.5%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 2.83e-01 92.3% 88.4%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.57 42.0 3.98e-01 80.0% 97.6%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.17e-01 96.9% 43.1%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 3.80e-01 81.5% 94.8%
1u9tA02 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 42.0 3.16e-01 80.0% 58.6%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.56 46.0 3.68e-01 96.9% 47.0%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 42.0 3.36e-01 84.6% 67.1%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 2.89e-01 80.0% 70.4%
3dgtA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.19e-01 100.0% 40.3%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.55 44.0 3.02e-01 87.7% 82.5%
3kbhE00 2.60.40.3130 Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) 0.55 38.0 3.25e-01 72.3% 59.1%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 42.0 3.58e-01 92.3% 65.6%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 44.0 3.61e-01 96.9% 71.0%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.41e-01 78.5% 65.1%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 2.92e-01 90.8% 23.7%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 38.0 4.00e-01 95.4% 89.7%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.96e-01 96.9% 30.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.04e-01 80.0% 83.9%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 46.0 3.05e-01 98.5% 59.4%
3ndaA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 43.0 3.44e-01 90.8% 72.7%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.32e-01 100.0% 47.5%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 2.83e-01 98.5% 27.6%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.22e-01 76.9% 72.1%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.10e-01 100.0% 54.1%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.52 44.0 3.60e-01 96.9% 59.5%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.60e-01 83.1% 28.1%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 42.0 3.20e-01 92.3% 89.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.73e-01 73.8% 82.8%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 41.0 3.16e-01 95.4% 73.1%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.81e-01 93.8% 82.0%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.50 39.0 3.47e-01 86.2% 88.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
355233 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.76 52.0 4.84e-01 70.8% 67.5%
3716442 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 52.0 3.19e-01 78.5% 21.0%
3487312 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.71 48.0 2.96e-01 70.8% 62.3%
3733036 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.69 58.0 3.61e-01 95.4% 18.1%
3494433 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 51.0 4.24e-01 86.2% 66.9%
3215406 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.65 57.0 3.38e-01 96.9% 30.3%
3295586 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.65 54.0 4.07e-01 93.8% 41.2%
853 9.1.1.23 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.65 50.0 3.99e-01 84.6% 75.8%
3978292 2484.1.1.251 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26691 0.65 47.0 2.90e-01 76.9% 61.0%
3228242 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.64 48.0 4.24e-01 81.5% 66.0%
4927221 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.64 47.0 3.38e-01 90.8% 28.6%
4014812 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.63 40.0 4.17e-01 73.8% 70.0%
3679631 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 47.0 3.08e-01 84.6% 27.3%
3825621 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.62 47.0 4.20e-01 83.1% 96.8%
3574409 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.62 44.0 4.04e-01 76.9% 58.9%
3504023 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.62 50.0 3.40e-01 90.8% 60.8%
4961901 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.60 44.0 3.29e-01 80.0% 42.6%
4002892 109.4.1.2561 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FATC 0.60 41.0 2.42e-01 72.3% 10.8%
4302456 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 40.0 3.63e-01 81.5% 50.0%
3890928 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.60 50.0 3.66e-01 93.8% 78.9%
3226497 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.60 48.0 4.03e-01 89.2% 54.8%
4363296 330.11.1.1 a+b two layers › dsRBD-like › Anti-lipopolysaccharide factor (ALF) › Anti-lipopolysaccharide factor (ALF) › Anti-LPS-SCYG 0.60 52.0 4.54e-01 100.0% 67.0%
3866695 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.59 49.0 3.77e-01 93.8% 82.6%
3206852 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.59 41.0 2.70e-01 72.3% 18.6%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 45.0 3.00e-01 83.1% 22.0%
3241305 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.58 48.0 3.81e-01 92.3% 83.6%
4958749 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.58 46.0 3.31e-01 95.4% 29.5%
3216442 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.58 40.0 2.89e-01 73.8% 36.2%
3867103 3417.1.1.1 a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.58 45.0 3.91e-01 95.4% 53.3%
4933430 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.58 47.0 3.44e-01 98.5% 32.6%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.51e-01 86.2% 92.3%
4973001 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.57 46.0 3.28e-01 98.5% 29.5%
3485043 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.57 40.0 2.76e-01 75.4% 24.1%
4994698 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.57 47.0 3.34e-01 98.5% 30.3%
3706670 292.2.1.6 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.57 44.0 3.74e-01 93.8% 50.0%
5049254 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 46.0 3.66e-01 93.8% 49.7%
4214866 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.57 44.0 2.77e-01 86.2% 19.0%
4891173 206.1.1.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC 0.56 44.0 2.96e-01 86.2% 84.6%
5079197 375.1.1.298 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_HMPTM 0.56 38.0 4.18e-01 70.8% 90.0%
3599635 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.80e-01 95.4% 69.2%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 38.0 3.45e-01 72.3% 51.1%
3483806 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 43.0 3.38e-01 87.7% 86.0%
1158445 10.32.1.45 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4465 0.55 44.0 3.02e-01 87.7% 82.5%
4961380 4972.1.1.1 beta barrels › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › barrel domain in CV3147-like proteins › DUF917_C 0.55 43.0 3.44e-01 86.2% 59.3%
3988065 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 45.0 4.39e-01 98.5% 85.3%
4954892 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 43.0 2.71e-01 89.2% 20.6%
3215500 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.06e-01 76.9% 98.2%
3897197 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.53 44.0 2.67e-01 96.9% 31.9%
3805766 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.53 38.0 4.01e-01 76.9% 96.4%
3167364 2004.1.1.481 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.53 43.0 2.61e-01 89.2% 22.1%
3412171 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.52 41.0 2.45e-01 89.2% 13.9%
4593845 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.52 42.0 2.66e-01 92.3% 26.8%
3776390 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.52 38.0 3.21e-01 80.0% 49.6%
3841524 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.51 38.0 3.23e-01 80.0% 50.9%
5047074 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 41.0 2.61e-01 90.8% 44.1%
4983459 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 42.0 2.59e-01 92.3% 18.3%