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OP380601.1__UYD59118.1__HPMBJEAJ_00003__00003
Bact-VirOP380601.1__UYD59118.1__HPMBJEAJ_00003__00003
Identity
- Accession:
- OP380601 ↗
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Ishigurovirus›
Aeromonas_phage_avDM6
TaxID: 3101602
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 125-264
Domain cluster:
rep: IMGVR_UViG_3300000255_000170-3300000255-LP_F_10_SI03_135DRAFT_10007621__D249-411
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7btoI02 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.58 | 43.0 | 4.01e-01 | 77.1% | 86.9% |
| 2l6xA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 42.0 | 3.56e-01 | 83.6% | 92.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3990129 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.70 | 60.0 | 5.15e-01 | 89.3% | 97.1% |
| 4359013 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.65 | 49.0 | 4.25e-01 | 77.9% | 100.0% |
| 4926849 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.64 | 52.0 | 3.95e-01 | 85.7% | 100.0% |
| 5050325 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.64 | 51.0 | 3.97e-01 | 83.6% | 100.0% |
| 5051526 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.63 | 51.0 | 4.03e-01 | 85.7% | 100.0% |
| 4959286 | 4333.1.1.2 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › TaqI_C | 0.62 | 52.0 | 4.57e-01 | 90.0% | 100.0% |
| 4964254 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.61 | 52.0 | 4.28e-01 | 92.9% | 99.6% |
| 4297667 | 4333.1.1.0 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain | 0.59 | 52.0 | 4.29e-01 | 94.3% | 99.6% |
D2
medium
residues 7-121_295-381
Domain cluster:
rep: IMGVR_UViG_3300025146_000547-3300025146-Ga0209322_100025826__D240-256_269-452
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02384.23 best | N6_Mtase | 25.0 | 1.60e-05 | 47.5% | 21.9% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gk5A00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.68 | 27.0 | 3.77e-01 | 86.1% | 72.0% |
| 3icsA03 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.66 | 27.0 | 3.74e-01 | 86.1% | 73.5% |
| 4g65A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 41.0 | 4.87e-01 | 99.5% | 89.1% |
| 1xttB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 38.0 | 3.78e-01 | 100.0% | 54.8% |
| 1g60B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 58.0 | 5.57e-01 | 93.1% | 89.9% |
| 5hfjC00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 55.0 | 5.53e-01 | 95.5% | 89.2% |
| 4dcmA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 42.0 | 4.40e-01 | 100.0% | 73.0% |
| 2p2sA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 38.0 | 4.46e-01 | 100.0% | 86.9% |
| 4dghA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.62 | 32.0 | 3.93e-01 | 100.0% | 76.6% |
| 1eg2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 58.0 | 5.20e-01 | 99.0% | 89.3% |
| 1booA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 57.0 | 5.07e-01 | 98.5% | 87.6% |
| 4dgfA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.60 | 33.0 | 4.13e-01 | 94.6% | 87.7% |
| 2x6qA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 39.0 | 4.04e-01 | 100.0% | 67.5% |
| 2vy9A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.59 | 29.0 | 3.80e-01 | 99.0% | 82.5% |
| 5jnmA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 42.0 | 4.24e-01 | 100.0% | 72.9% |
| 4zylB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 34.0 | 3.97e-01 | 100.0% | 79.9% |
| 3bt7A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 42.0 | 4.06e-01 | 100.0% | 68.3% |
| 6ifsB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 43.0 | 4.43e-01 | 100.0% | 83.4% |
| 1shuX00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.56 | 42.0 | 4.41e-01 | 100.0% | 86.2% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.55 | 28.0 | 3.39e-01 | 86.1% | 72.7% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.55 | 41.0 | 4.57e-01 | 88.1% | 100.0% |
| 4l22A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 49.0 | 3.86e-01 | 100.0% | 84.9% |
| 3ct6A00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.53 | 32.0 | 3.92e-01 | 100.0% | 93.1% |
| 1auqA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.53 | 41.0 | 4.12e-01 | 100.0% | 78.8% |
| 7f8aA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 38.0 | 4.11e-01 | 96.0% | 87.2% |
| 3gdwB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.53 | 32.0 | 3.82e-01 | 100.0% | 88.4% |
| 5gizA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.52 | 29.0 | 3.59e-01 | 98.5% | 84.5% |
| 3lloA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.52 | 31.0 | 3.72e-01 | 97.5% | 89.4% |
| 3tm4A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 4.08e-01 | 84.2% | 89.7% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 3.87e-01 | 85.6% | 74.9% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4984681 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.80 | 36.0 | 4.31e-01 | 96.0% | 61.4% |
| 4373979 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.68 | 64.0 | 5.51e-01 | 99.5% | 81.7% |
| 5042985 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.66 | 62.0 | 5.72e-01 | 100.0% | 87.1% |
| None | — | 0.66 | 62.0 | 5.74e-01 | 100.0% | 88.8% | |
| 4233076 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.64 | 57.0 | 4.98e-01 | 93.6% | 79.7% |
| 3839633 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.64 | 57.0 | 5.41e-01 | 93.1% | 90.4% |
| 5065486 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.63 | 59.0 | 5.41e-01 | 99.5% | 96.9% |
| 4084378 | 2003.1.5.182 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_11 | 0.59 | 42.0 | 4.40e-01 | 100.0% | 79.5% |
| 4519350 | 2003.1.5.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD | 0.58 | 43.0 | 4.26e-01 | 100.0% | 72.6% |
| 4091052 | 2003.1.5.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD | 0.57 | 43.0 | 4.31e-01 | 100.0% | 76.1% |
| 4057080 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.57 | 51.0 | 4.99e-01 | 97.5% | 88.2% |
| 3538388 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.56 | 50.0 | 4.80e-01 | 100.0% | 83.4% |
| 4462668 | 2003.1.5.182 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_11 | 0.55 | 44.0 | 4.34e-01 | 100.0% | 77.7% |
| 4333133 | 2003.1.5.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD | 0.55 | 42.0 | 4.26e-01 | 100.0% | 79.0% |
| 3711595 | 7517.1.1.0 ↗ | a/b three-layered sandwiches › Nucleoside hydrolase › Nucleoside hydrolase › Nucleoside hydrolase | 0.52 | 48.0 | 3.89e-01 | 100.0% | 92.6% |
| 3910772 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.51 | 38.0 | 3.73e-01 | 100.0% | 70.9% |
| 4499454 | 2003.1.5.155 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_25 | 0.50 | 38.0 | 3.91e-01 | 96.5% | 83.2% |
| 4418049 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.50 | 46.0 | 3.78e-01 | 100.0% | 67.6% |