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OP380601.1__UYD59172.1__HPMBJEAJ_00057__00057

Bact-Vir

OP380601.1__UYD59172.1__HPMBJEAJ_00057__00057

Identity

Accession:
OP380601 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 56.0 3.72e-01 100.0% 19.5%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.74 62.0 4.87e-01 100.0% 48.6%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.74 61.0 5.40e-01 100.0% 73.7%
2v5yA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 58.0 4.67e-01 100.0% 45.3%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.72 62.0 5.77e-01 100.0% 79.4%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.72 53.0 3.70e-01 100.0% 25.2%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.72 58.0 5.77e-01 97.9% 90.0%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 52.0 3.75e-01 100.0% 27.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 60.0 4.17e-01 100.0% 48.5%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 56.0 4.69e-01 100.0% 51.8%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.69 57.0 3.69e-01 100.0% 38.3%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.69 56.0 4.21e-01 100.0% 34.8%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.69 56.0 4.47e-01 100.0% 47.3%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 59.0 4.65e-01 100.0% 48.5%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 56.0 4.72e-01 95.8% 91.8%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 56.0 4.46e-01 100.0% 58.3%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.67 55.0 4.03e-01 100.0% 33.6%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 46.0 3.29e-01 72.9% 89.3%
1yqsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.66 48.0 2.93e-01 81.2% 38.3%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 55.0 4.51e-01 100.0% 50.6%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.66 56.0 4.59e-01 100.0% 51.6%
4ezeB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.66 53.0 3.32e-01 91.7% 55.7%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.66 48.0 3.31e-01 79.2% 94.1%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 48.0 2.96e-01 81.2% 13.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 53.0 4.71e-01 100.0% 71.1%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 56.0 4.69e-01 100.0% 95.2%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 56.0 3.75e-01 100.0% 34.6%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 49.0 3.00e-01 89.6% 61.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.64 53.0 4.46e-01 100.0% 53.3%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.63 44.0 3.44e-01 100.0% 32.1%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 50.0 4.30e-01 100.0% 66.3%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 47.0 2.84e-01 83.3% 39.0%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.63 45.0 3.18e-01 79.2% 94.0%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.63 47.0 3.35e-01 83.3% 37.9%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 53.0 4.03e-01 100.0% 45.9%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 53.0 4.35e-01 100.0% 52.1%
1wfmA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 54.0 3.89e-01 100.0% 44.9%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 46.0 3.60e-01 100.0% 36.0%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.61 49.0 3.05e-01 93.8% 30.7%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.61 55.0 4.04e-01 100.0% 39.7%
5irbA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.08e-01 100.0% 45.2%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 3.55e-01 100.0% 30.9%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 48.0 3.70e-01 91.7% 69.8%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.03e-01 100.0% 51.9%
2bnmA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 46.0 3.47e-01 97.9% 34.2%
4y0eB00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.60 42.0 2.61e-01 75.0% 48.8%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 48.0 4.12e-01 97.9% 74.7%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 44.0 3.46e-01 100.0% 35.6%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 44.0 3.66e-01 100.0% 44.2%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 48.0 3.93e-01 100.0% 54.7%
2rftA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.55 48.0 3.07e-01 100.0% 23.8%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.54 42.0 2.96e-01 97.9% 89.3%
4h32A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.53 46.0 3.02e-01 100.0% 26.8%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 45.0 3.49e-01 100.0% 59.5%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 46.0 2.96e-01 100.0% 38.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014007 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.76 64.0 6.21e-01 100.0% 89.1%
3668699 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 62.0 5.40e-01 100.0% 66.3%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 62.0 4.96e-01 100.0% 53.3%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 62.0 5.63e-01 100.0% 80.0%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 62.0 4.96e-01 100.0% 53.8%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 62.0 5.52e-01 100.0% 74.7%
5027528 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.74 60.0 4.94e-01 100.0% 50.6%
3582591 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.74 64.0 4.71e-01 100.0% 39.1%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 61.0 5.88e-01 100.0% 96.6%
4954188 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.74 61.0 4.44e-01 100.0% 32.2%
3213931 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.73 64.0 4.67e-01 100.0% 49.2%
4964337 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.73 64.0 6.13e-01 100.0% 87.3%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 60.0 5.97e-01 97.9% 98.0%
4301105 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 60.0 4.87e-01 100.0% 54.0%
4971294 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 63.0 5.56e-01 100.0% 71.4%
4945478 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.71 57.0 4.07e-01 100.0% 30.7%
4353391 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 50.0 2.82e-01 77.1% 32.5%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 58.0 5.74e-01 100.0% 92.0%
5075402 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.69 49.0 3.08e-01 79.2% 54.0%
5063757 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 58.0 4.94e-01 100.0% 58.2%
3831039 109.4.1.1599 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.68 57.0 3.17e-01 100.0% 11.7%
4990154 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.68 55.0 4.37e-01 97.9% 99.1%
5081038 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 58.0 4.59e-01 100.0% 47.0%
119284 3115.2.1.1 a+b two layers › GP2-like › GP2 › GP2 › RNA_pol_inhib 0.67 53.0 5.08e-01 100.0% 78.0%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.67 57.0 5.34e-01 100.0% 80.0%
4990844 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.66 55.0 4.42e-01 100.0% 100.0%
3415586 11.2.1.10 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF3668 0.66 56.0 3.86e-01 100.0% 82.2%
3248816 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 54.0 4.46e-01 100.0% 50.0%
3816579 109.4.1.1599 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.66 54.0 3.20e-01 100.0% 20.9%
3837823 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.65 53.0 2.98e-01 100.0% 14.5%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 55.0 4.82e-01 100.0% 97.3%
3595003 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 53.0 5.03e-01 100.0% 83.3%
3415271 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.64 53.0 4.64e-01 100.0% 60.0%
3333061 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.64 52.0 2.98e-01 100.0% 15.2%
4310274 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.63 56.0 4.23e-01 100.0% 91.3%
4008896 11.1.1.1286 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 0.63 43.0 3.26e-01 72.9% 99.2%
3340161 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.62 45.0 3.09e-01 79.2% 70.8%
3603767 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.62 53.0 4.21e-01 100.0% 71.4%
4968352 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.60 51.0 4.33e-01 100.0% 88.2%
3936136 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.60 51.0 3.53e-01 100.0% 27.9%
2080145 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 48.0 4.05e-01 97.9% 69.9%
5067811 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.58 49.0 3.36e-01 100.0% 46.8%
3760983 3335.1.1.3 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › KCTD18_C 0.58 52.0 4.06e-01 100.0% 95.0%
5050481 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.15e-01 83.3% 34.5%
4955225 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.57 47.0 3.06e-01 100.0% 18.4%
3637444 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 48.0 3.09e-01 100.0% 19.6%
4469838 10.32.1.215 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29167 0.56 46.0 3.29e-01 100.0% 62.4%
3771226 382.1.1.3 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.54 44.0 3.75e-01 100.0% 56.7%
3666673 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.08e-01 100.0% 80.0%
3608700 320.4.1.0 a+b two layers › R3H domain-like › PUB domain › PUB domain 0.51 38.0 2.73e-01 93.8% 25.3%