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OP380601.1__UYD59223.1__HPMBJEAJ_00108__00108
Bact-VirOP380601.1__UYD59223.1__HPMBJEAJ_00108__00108
Identity
- Accession:
- OP380601 ↗
- Kingdom:
- phage
Quality
85.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Ishigurovirus›
Aeromonas_phage_avDM6
TaxID: 3101602
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-137
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.89 | 28.0 | 5.32e-01 | 83.9% | 95.5% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 40.0 | 4.93e-01 | 86.1% | 73.6% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.75 | 34.0 | 4.12e-01 | 85.4% | 63.9% |
| 4c5eC02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 39.0 | 4.57e-01 | 98.5% | 72.9% |
| 2rpaA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.73 | 34.0 | 4.49e-01 | 85.4% | 79.2% |
| 4wzxA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 33.0 | 4.36e-01 | 84.7% | 80.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 26.0 | 4.07e-01 | 78.8% | 83.9% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 36.0 | 4.21e-01 | 83.2% | 74.5% |
| 2hz8A00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.60 | 37.0 | 4.07e-01 | 86.9% | 73.9% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.58 | 32.0 | 3.29e-01 | 83.9% | 56.3% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.55 | 33.0 | 4.19e-01 | 84.7% | 97.6% |
| 5ux1D00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 43.0 | 3.76e-01 | 84.7% | 64.0% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 40.0 | 4.05e-01 | 86.1% | 82.2% |
| 3zciA00 | 1.20.58.1660 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 39.0 | 3.49e-01 | 86.1% | 58.1% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4366957 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.90 | 27.0 | 5.26e-01 | 76.6% | 91.1% |
| 375927 | 150.1.1.14 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like | 0.80 | 40.0 | 4.88e-01 | 86.9% | 72.8% |
| 4568335 | 3812.1.1.8 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › DUF5398 | 0.78 | 34.0 | 4.91e-01 | 80.3% | 85.5% |
| 3927321 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.77 | 34.0 | 4.61e-01 | 84.7% | 76.2% |
| 2142296 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.75 | 39.0 | 4.65e-01 | 86.9% | 72.4% |
| 3223929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 46.0 | 4.44e-01 | 100.0% | 55.5% |
| 5016885 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.74 | 32.0 | 4.82e-01 | 79.6% | 90.8% |
| 5008666 | 192.6.1.12 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › PF27306 | 0.73 | 33.0 | 4.24e-01 | 82.5% | 71.8% |
| 3414767 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 34.0 | 4.43e-01 | 85.4% | 77.5% |
| 4034237 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.70 | 38.0 | 4.17e-01 | 85.4% | 64.3% |
| 3641813 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.67 | 35.0 | 4.18e-01 | 82.5% | 73.7% |
| 4429835 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.67 | 38.0 | 4.42e-01 | 95.6% | 77.0% |
| 3624526 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.66 | 44.0 | 3.96e-01 | 100.0% | 49.7% |
| 4998039 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.66 | 36.0 | 4.21e-01 | 84.7% | 74.0% |
| 4345287 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.66 | 38.0 | 4.48e-01 | 94.9% | 79.0% |
| 3510163 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.66 | 37.0 | 4.19e-01 | 86.1% | 70.0% |
| 4992256 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 38.0 | 4.50e-01 | 83.9% | 80.8% |
| 3924442 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.65 | 36.0 | 3.98e-01 | 83.2% | 67.3% |
| 3474564 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 31.0 | 3.53e-01 | 83.9% | 63.8% |
| 5012672 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.60 | 38.0 | 4.63e-01 | 87.6% | 96.7% |
| 5066873 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.60 | 36.0 | 3.51e-01 | 81.8% | 56.0% |
| 3809724 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.58 | 38.0 | 3.85e-01 | 86.1% | 65.7% |
| 3766400 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.56 | 39.0 | 4.38e-01 | 83.9% | 88.2% |
| 5048466 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 47.0 | 4.67e-01 | 87.6% | 96.4% |
| 3793179 | 109.4.1.114 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T | 0.56 | 40.0 | 2.52e-01 | 90.5% | 15.2% |
| 3226372 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.54 | 34.0 | 3.80e-01 | 84.7% | 80.0% |
| 4960003 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.54 | 41.0 | 4.25e-01 | 85.4% | 82.3% |
| 5055939 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.54 | 45.0 | 4.19e-01 | 87.6% | 83.0% |
| 3658685 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.53 | 36.0 | 3.96e-01 | 83.9% | 82.6% |
| 3804987 | 5001.1.1.122 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PF27754 | 0.53 | 44.0 | 3.26e-01 | 86.1% | 60.9% |
| 4393704 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 43.0 | 2.94e-01 | 87.6% | 32.9% |
| 3632463 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.51 | 32.0 | 3.39e-01 | 82.5% | 69.2% |
| 3256857 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 3.08e-01 | 86.1% | 36.2% |
| 3807651 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.51 | 39.0 | 4.32e-01 | 97.1% | 100.0% |
| 3394272 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.51 | 40.0 | 3.68e-01 | 82.5% | 86.3% |