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OP380601.1__UYD59422.1__HPMBJEAJ_00323__00307

Bact-Vir

OP380601.1__UYD59422.1__HPMBJEAJ_00323__00307

Identity

Accession:
OP380601 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ishigurovirus› Aeromonas_phage_avDM6

TaxID: 3101602

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-75
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.72 54.0 4.15e-01 78.6% 53.0%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.73e-01 78.6% 71.4%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.18e-01 97.1% 83.5%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.68 48.0 3.83e-01 75.7% 41.0%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.68 57.0 4.19e-01 100.0% 49.1%
3r0sA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.67 55.0 5.69e-01 91.4% 96.9%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.67 48.0 4.64e-01 77.1% 86.1%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 49.0 4.26e-01 80.0% 89.2%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.66 50.0 3.86e-01 81.4% 50.6%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.36e-01 100.0% 97.8%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.65 45.0 3.96e-01 74.3% 82.6%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 55.0 4.99e-01 100.0% 73.7%
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.63 55.0 4.88e-01 100.0% 72.1%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.63 48.0 3.77e-01 84.3% 51.3%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.89e-01 100.0% 77.0%
1cm5A00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.61 54.0 3.07e-01 100.0% 30.2%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.61 49.0 4.61e-01 98.6% 72.9%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.61 40.0 3.18e-01 85.7% 32.2%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.61 52.0 4.80e-01 100.0% 79.8%
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.87e-01 74.3% 59.3%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 40.0 3.99e-01 71.4% 66.7%
4bjmC00 1.20.58.1680 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 42.0 3.02e-01 80.0% 34.4%
3cxbA01 3.30.2440.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA 0.56 45.0 4.01e-01 95.7% 92.2%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.56 42.0 3.69e-01 81.4% 73.4%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.56 40.0 3.62e-01 78.6% 94.3%
3u61D03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.55 40.0 3.73e-01 78.6% 100.0%
3tahA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 43.0 4.09e-01 100.0% 71.6%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.55 40.0 3.65e-01 82.9% 77.9%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 42.0 3.98e-01 87.1% 77.6%
5fb0A02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 43.0 3.83e-01 92.9% 76.8%
4kc9A02 1.20.120.1750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 40.0 2.90e-01 81.4% 84.6%
1ysyA00 1.10.8.370 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › nsp7 replicase 0.54 39.0 3.71e-01 78.6% 70.6%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.92e-01 90.0% 84.4%
2whnA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.53 38.0 3.38e-01 80.0% 77.3%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.52 44.0 3.57e-01 95.7% 56.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4489939 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.77 58.0 6.18e-01 80.0% 98.3%
3238411 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 60.0 5.94e-01 87.1% 80.0%
3889216 509.1.1.3 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › USH1C_N 0.69 55.0 5.42e-01 98.6% 81.3%
4460488 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.68 50.0 5.61e-01 91.4% 100.0%
3719809 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.67 58.0 5.15e-01 98.6% 67.0%
3523432 509.1.1.10 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 0.67 57.0 4.96e-01 98.6% 62.5%
4504399 509.1.1.10 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 0.65 54.0 5.18e-01 97.1% 78.8%
4016796 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.65 56.0 5.15e-01 97.1% 73.3%
3956733 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.64 54.0 3.65e-01 98.6% 56.9%
5000432 101.1.17.1 ↗ alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.64 50.0 4.62e-01 85.7% 81.1%
2337267 5000.3.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.64 43.0 3.67e-01 71.4% 50.0%
3482059 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.64 55.0 4.99e-01 95.7% 83.9%
4954763 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.63 53.0 5.00e-01 100.0% 81.1%
3355851 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.63 55.0 3.65e-01 100.0% 29.0%
3786128 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.64e-01 100.0% 72.5%
3439039 101.1.1.66 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.62 46.0 3.87e-01 81.4% 49.2%
3897425 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.62 54.0 5.08e-01 98.6% 91.8%
4970630 109.61.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1 › MJ1579 0.61 51.0 5.08e-01 98.6% 93.3%
None — 0.61 53.0 3.70e-01 98.6% 70.6%
5049770 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.61 51.0 3.69e-01 100.0% 50.4%
5017330 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 3.52e-01 72.9% 78.4%
3253015 6088.1.1.2 ↗ alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › PF26051 0.60 51.0 4.93e-01 100.0% 98.8%
4105352 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.60 51.0 3.48e-01 98.6% 61.7%
3596791 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.60 44.0 3.20e-01 80.0% 49.5%
3186610 192.19.1.0 ↗ alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like 0.59 36.0 3.44e-01 97.1% 50.6%
3789663 4979.2.1.0 ↗ alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) 0.59 43.0 4.32e-01 97.1% 78.6%
3938558 4979.2.1.1 ↗ alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD 0.58 43.0 4.01e-01 100.0% 62.2%
3930038 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 48.0 4.50e-01 95.7% 88.9%
3269226 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 45.0 4.45e-01 91.4% 84.0%
5038448 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.56 39.0 3.76e-01 75.7% 62.5%
3619435 192.8.1.36 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.56 42.0 3.84e-01 80.0% 95.8%
4417099 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 44.0 3.98e-01 100.0% 62.0%
3185107 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.63e-01 95.7% 94.3%
4927391 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.54 44.0 4.43e-01 98.6% 97.1%
2741039 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.54 40.0 4.12e-01 98.6% 80.9%
3996708 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 38.0 3.21e-01 77.1% 83.8%
3405876 592.2.1.12 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › PF26051 0.51 41.0 4.11e-01 100.0% 98.7%
4843670 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 43.0 3.35e-01 92.9% 55.0%
4101335 2006.1.4.8 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.51 41.0 2.94e-01 91.4% 45.8%