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OP380603.1__UYD59800.1__LEHPIFIF_00027__00027

Bact-Vir

OP380603.1__UYD59800.1__LEHPIFIF_00027__00027

Identity

Accession:
OP380603 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-62
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.80 53.0 3.83e-01 73.2% 26.0%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.77 51.0 3.86e-01 73.2% 29.9%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.75 51.0 3.93e-01 71.4% 41.8%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.74 60.0 3.59e-01 91.1% 54.4%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.73 50.0 3.58e-01 71.4% 52.9%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.73 50.0 4.01e-01 71.4% 87.9%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.73 50.0 4.14e-01 83.9% 39.8%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.72 49.0 4.38e-01 71.4% 97.5%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.70 49.0 3.79e-01 73.2% 35.0%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 46.0 3.94e-01 71.4% 90.4%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 51.0 3.50e-01 83.9% 46.1%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.65 56.0 5.12e-01 96.4% 77.0%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 52.0 3.29e-01 91.1% 74.0%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 53.0 4.59e-01 89.3% 90.7%
3msyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.65 51.0 4.12e-01 87.5% 78.4%
1ig8A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 48.0 3.69e-01 82.1% 95.5%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 50.0 3.38e-01 87.5% 54.1%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.64 49.0 3.92e-01 83.9% 73.7%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 54.0 3.83e-01 96.4% 47.8%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.63 56.0 3.96e-01 100.0% 57.3%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.63 54.0 4.13e-01 98.2% 75.0%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.63 40.0 2.89e-01 71.4% 21.3%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 52.0 3.59e-01 94.6% 61.3%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 43.0 3.86e-01 73.2% 61.3%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.62 49.0 3.38e-01 87.5% 48.7%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 43.0 4.10e-01 73.2% 75.8%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 51.0 4.16e-01 92.9% 95.3%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 55.0 3.85e-01 100.0% 60.5%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.61 53.0 3.86e-01 100.0% 43.5%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.61 49.0 4.17e-01 96.4% 53.4%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.61 50.0 4.66e-01 100.0% 71.8%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.60 50.0 3.77e-01 100.0% 36.0%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 3.94e-01 98.2% 95.1%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 3.05e-01 100.0% 23.1%
6r2nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 42.0 3.28e-01 82.1% 94.3%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.57 47.0 3.40e-01 94.6% 89.3%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 51.0 3.24e-01 100.0% 38.8%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 48.0 3.72e-01 100.0% 71.5%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 49.0 3.12e-01 100.0% 52.7%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 47.0 3.90e-01 100.0% 64.5%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.53 40.0 3.52e-01 98.2% 54.8%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.51e-01 100.0% 51.0%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.15e-01 91.1% 68.8%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 2.92e-01 98.2% 27.6%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.51 42.0 3.73e-01 98.2% 94.4%
3dxpA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 3.63e-01 96.4% 74.2%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226500 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.81 66.0 4.17e-01 89.3% 33.6%
4082107 7089.1.1.3 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › MmoD 0.80 56.0 5.16e-01 98.2% 58.6%
3738183 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.80 55.0 4.24e-01 73.2% 37.6%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.77 54.0 4.36e-01 73.2% 39.0%
3463667 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.75 58.0 3.57e-01 96.4% 14.5%
4464657 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.74 56.0 4.91e-01 98.2% 56.2%
5039391 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 59.0 3.52e-01 91.1% 38.9%
1731086 295.1.1.9 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Imm42 0.73 59.0 4.29e-01 100.0% 32.3%
3903931 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.73 58.0 3.59e-01 89.3% 28.5%
4028641 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.72 58.0 3.28e-01 91.1% 31.1%
3697524 9.2.1.7 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.71 49.0 4.20e-01 71.4% 46.7%
4122018 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.71 49.0 4.08e-01 73.2% 41.0%
3742051 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 62.0 3.83e-01 100.0% 24.1%
5014685 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 47.0 4.50e-01 71.4% 60.0%
5001101 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.70 49.0 4.86e-01 98.2% 70.0%
3512065 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 46.0 4.43e-01 87.5% 60.0%
3416070 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 61.0 3.72e-01 100.0% 20.0%
3933565 5.1.4.229 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.69 61.0 3.66e-01 100.0% 18.9%
3611447 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 60.0 3.52e-01 100.0% 19.6%
3925491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.68 56.0 3.78e-01 92.9% 63.2%
3926886 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.68 52.0 4.00e-01 87.5% 72.1%
4951804 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.68 50.0 3.74e-01 96.4% 32.1%
3540949 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 53.0 3.44e-01 91.1% 69.7%
3827202 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.67 60.0 3.96e-01 100.0% 28.2%
3501432 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 49.0 4.00e-01 80.4% 84.5%
3734097 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 58.0 3.50e-01 100.0% 19.2%
4030203 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 58.0 3.21e-01 100.0% 9.5%
4957722 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.66 54.0 4.13e-01 92.9% 93.5%
4029623 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 59.0 3.37e-01 100.0% 14.3%
3563261 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 58.0 3.69e-01 100.0% 28.6%
3402824 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.66 58.0 3.46e-01 100.0% 16.3%
3630423 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 51.0 4.45e-01 100.0% 55.3%
3591998 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.66 59.0 4.69e-01 100.0% 97.3%
3556710 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.65 55.0 4.29e-01 96.4% 83.6%
3468426 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 56.0 3.48e-01 100.0% 27.2%
3707052 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 56.0 3.31e-01 100.0% 20.1%
1144832 2484.1.1.63 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 0.65 50.0 4.13e-01 83.9% 82.0%
3591928 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 55.0 3.39e-01 100.0% 24.1%
3414195 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 58.0 4.75e-01 100.0% 97.0%
3699834 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.64 53.0 4.20e-01 96.4% 78.4%
4945459 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.64 55.0 3.46e-01 100.0% 20.7%
3255196 4970.1.1.28 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › SPC25 0.63 57.0 4.57e-01 98.2% 68.9%
5078190 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.63 49.0 3.11e-01 96.4% 17.7%
4958733 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 56.0 4.92e-01 98.2% 78.8%
3449739 207.1.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.62 44.0 2.72e-01 100.0% 11.4%
3717304 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 53.0 3.32e-01 100.0% 19.4%
863938 328.5.1.3 a+b two layers › IF3-like › SirA-like › SirA-like › Tsi1 0.60 50.0 3.77e-01 100.0% 36.0%
3966449 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.59 49.0 3.76e-01 100.0% 38.6%
3219425 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.59 51.0 3.96e-01 98.2% 56.8%
3832069 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 40.0 3.90e-01 73.2% 69.2%
4492101 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 50.0 4.26e-01 94.6% 58.9%
3659272 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 51.0 3.22e-01 100.0% 42.1%
3610541 73.1.1.11 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › DUF3586 0.57 51.0 4.44e-01 100.0% 68.2%
3614247 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.83e-01 100.0% 90.4%
4600473 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 46.0 3.53e-01 91.1% 44.4%
3750853 330.1.1.18 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_DHX29 0.57 45.0 3.56e-01 89.3% 43.3%
3717236 220.1.1.175 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.56 47.0 3.64e-01 100.0% 77.9%
4947050 206.1.1.17 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo 0.56 50.0 3.36e-01 100.0% 61.9%
4956914 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 49.0 3.22e-01 100.0% 50.6%
4087213 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 47.0 4.31e-01 100.0% 74.7%
3638957 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.53 46.0 2.65e-01 96.4% 11.0%
4975626 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 44.0 3.41e-01 100.0% 58.0%
4960287 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.51 41.0 3.69e-01 100.0% 72.2%
3822963 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 40.0 3.26e-01 98.2% 77.7%