Back to structures

OP380603.1__UYD59952.1__LEHPIFIF_00179__00179

Bact-Vir

OP380603.1__UYD59952.1__LEHPIFIF_00179__00179

Identity

Accession:
OP380603 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.71 60.0 4.92e-01 93.7% 77.0%
1pv1A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.71 56.0 3.57e-01 85.7% 49.0%
3fcxB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 54.0 3.54e-01 85.7% 47.6%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 54.0 3.67e-01 85.7% 51.7%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.66 49.0 3.76e-01 81.0% 68.7%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.65 55.0 4.98e-01 96.8% 75.3%
2e5aA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.63 50.0 4.44e-01 87.3% 97.8%
1ko2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.63 53.0 3.65e-01 100.0% 26.5%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 51.0 4.48e-01 96.8% 65.7%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 51.0 3.56e-01 98.4% 27.4%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.61 44.0 3.07e-01 76.2% 50.2%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.61 43.0 2.87e-01 74.6% 84.1%
5a0tB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 45.0 2.93e-01 79.4% 34.8%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 4.03e-01 100.0% 55.0%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 4.05e-01 100.0% 58.0%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 3.99e-01 100.0% 56.4%
6j4nC01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 47.0 2.94e-01 85.7% 16.4%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 3.94e-01 100.0% 54.2%
1qh5A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 50.0 3.40e-01 98.4% 81.9%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.59 51.0 4.37e-01 100.0% 78.3%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 51.0 3.94e-01 98.4% 75.0%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 49.0 3.89e-01 98.4% 75.3%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 3.34e-01 98.4% 75.2%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 44.0 2.97e-01 85.7% 24.8%
2az4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 48.0 3.26e-01 98.4% 95.9%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 49.0 3.69e-01 98.4% 73.9%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 51.0 3.22e-01 100.0% 85.8%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 43.0 3.68e-01 81.0% 71.6%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 43.0 3.70e-01 82.5% 88.2%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 3.69e-01 100.0% 50.6%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.56 42.0 3.95e-01 79.4% 76.0%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.56 45.0 3.75e-01 90.5% 69.6%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.64e-01 98.4% 56.7%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 41.0 2.77e-01 81.0% 42.0%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 37.0 3.60e-01 74.6% 60.3%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 45.0 3.62e-01 100.0% 76.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 3.83e-01 76.2% 67.6%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 48.0 3.09e-01 100.0% 89.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 3.91e-01 98.4% 59.6%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 44.0 2.93e-01 93.7% 93.6%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.76e-01 76.2% 72.1%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.99e-01 96.8% 68.0%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.53 36.0 3.70e-01 71.4% 90.3%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.73e-01 77.8% 91.5%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 43.0 2.83e-01 90.5% 24.7%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.42e-01 85.7% 73.3%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 44.0 2.95e-01 96.8% 94.8%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 43.0 3.25e-01 100.0% 38.9%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.51 42.0 3.65e-01 100.0% 74.6%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 44.0 3.19e-01 100.0% 60.9%
1qwoA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 40.0 2.49e-01 85.7% 27.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890928 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.72 49.0 3.48e-01 71.4% 77.8%
3277842 4187.1.1.1 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.69 49.0 5.00e-01 73.0% 100.0%
3575937 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 48.0 3.05e-01 73.0% 46.2%
3506414 12.3.1.42 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 0.67 49.0 3.36e-01 77.8% 53.8%
3505182 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 60.0 5.52e-01 100.0% 78.8%
1949057 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.67 47.0 3.75e-01 73.0% 46.7%
3232582 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 43.0 3.73e-01 92.1% 44.2%
2644388 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 46.0 3.62e-01 73.0% 43.8%
5018922 7579.1.1.13 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH 0.65 51.0 3.45e-01 85.7% 43.0%
3451705 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.65 53.0 4.13e-01 90.5% 44.3%
5007937 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 47.0 3.16e-01 77.8% 36.3%
4929398 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.62 53.0 5.01e-01 100.0% 97.5%
3704834 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 51.0 4.55e-01 96.8% 67.4%
3588059 247.1.1.24 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B+Lactamase_B_2 0.62 47.0 3.11e-01 82.5% 20.1%
5046734 247.1.1.30 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Anti-Pycsar_Apyc1 0.61 48.0 3.21e-01 84.1% 21.8%
4403166 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 48.0 4.78e-01 90.5% 81.5%
5049751 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.60 49.0 3.13e-01 96.8% 17.3%
5024426 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.60 51.0 3.47e-01 98.4% 79.1%
3987947 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.60 52.0 3.46e-01 100.0% 80.3%
4887870 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 52.0 3.88e-01 100.0% 50.3%
4146514 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.60 51.0 3.44e-01 98.4% 81.9%
4982215 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.60 51.0 3.45e-01 98.4% 82.3%
3655368 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 43.0 4.06e-01 77.8% 64.0%
5061343 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.60 45.0 3.05e-01 82.5% 22.0%
3896484 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.59 44.0 3.56e-01 100.0% 41.7%
6333 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.59 51.0 3.95e-01 98.4% 75.5%
5047148 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 47.0 3.00e-01 87.3% 38.5%
4951353 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.59 50.0 3.37e-01 98.4% 81.5%
5050683 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 42.0 3.38e-01 74.6% 64.8%
3436093 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 42.0 4.02e-01 77.8% 64.0%
3509111 247.1.1.29 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2, Anti-Pycsar_Apyc1 0.59 50.0 3.40e-01 100.0% 81.1%
185771 3561.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 0.59 41.0 2.49e-01 76.2% 20.9%
3672898 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.58 50.0 4.07e-01 100.0% 96.0%
4950969 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.58 46.0 2.77e-01 90.5% 13.4%
4964235 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.58 46.0 3.16e-01 92.1% 36.5%
4942549 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 50.0 3.23e-01 98.4% 96.6%
5064080 247.1.1.11 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.56 48.0 3.23e-01 100.0% 96.7%
3951937 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.56 43.0 3.88e-01 81.0% 65.2%
4978599 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 50.0 3.06e-01 98.4% 80.5%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 46.0 3.74e-01 100.0% 85.7%
3938746 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.94e-01 96.8% 88.4%
3582457 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.00e-01 98.4% 91.8%
3991735 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.54 39.0 3.33e-01 79.4% 59.1%
5083405 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.54 48.0 2.92e-01 100.0% 67.1%
3204996 5.1.3.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.54 46.0 2.81e-01 96.8% 92.4%
4959178 4252.1.1.12 beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.54 46.0 3.81e-01 100.0% 85.8%
3279607 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.54 44.0 3.92e-01 98.4% 81.0%
3636263 5.1.3.137 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.54 46.0 2.85e-01 96.8% 90.0%
5025094 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 3.53e-01 88.9% 80.0%
3507995 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.53 44.0 3.13e-01 96.8% 42.8%
3261912 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 43.0 2.82e-01 96.8% 93.6%
3615838 517.1.1.1 beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.51 44.0 3.48e-01 98.4% 58.5%
3749631 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.51 33.0 2.91e-01 100.0% 40.0%
2831853 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.50 34.0 2.60e-01 98.4% 27.7%
3993370 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.50 44.0 2.85e-01 98.4% 89.0%