←Back to structures
OP380604.1__UYD60048.1__OPFAMLBM_00027__00027
Bact-VirOP380604.1__UYD60048.1__OPFAMLBM_00027__00027
Identity
- Accession:
- OP380604 ↗
- Kingdom:
- phage
Quality
62.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Chrysonvirus›
Aeromonas_phage_avDM12-TAAL
TaxID: 3101605
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-156
Domain cluster:
rep: HM452126.1__ADM79999.1__phiAS5_ORF0156__00156__D50-138
D2
high
residues 290-346
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.83 | 65.0 | 5.34e-01 | 82.5% | 52.6% |
| 1wvvB01 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.80 | 61.0 | 6.62e-01 | 89.5% | 95.8% |
| 3k3sH01 | 2.30.130.110 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.80 | 57.0 | 5.04e-01 | 75.4% | 91.5% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.79 | 58.0 | 6.09e-01 | 80.7% | 86.3% |
| 2rtsA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.74 | 57.0 | 5.24e-01 | 82.5% | 64.4% |
| 3aiiA02 | 2.40.240.100 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.64 | 48.0 | 4.68e-01 | 80.7% | 98.4% |
| 2jiiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 43.0 | 3.44e-01 | 70.2% | 38.2% |
| 5f3yA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 43.0 | 3.94e-01 | 73.7% | 97.4% |
| 4mptA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 41.0 | 3.06e-01 | 75.4% | 30.6% |
| 2iz4A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.56 | 35.0 | 3.73e-01 | 77.2% | 67.3% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.56 | 46.0 | 4.39e-01 | 96.5% | 84.3% |
| 1e4eA03 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 3.75e-01 | 98.2% | 87.5% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 43.0 | 3.60e-01 | 86.0% | 70.0% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 45.0 | 3.25e-01 | 94.7% | 63.1% |
| 3k3pA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 45.0 | 3.77e-01 | 98.2% | 91.9% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.52 | 38.0 | 3.81e-01 | 77.2% | 82.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3057047 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.82 | 60.0 | 5.57e-01 | 77.2% | 87.1% |
| 4009007 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.82 | 65.0 | 6.92e-01 | 84.2% | 96.0% |
| 4026053 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.81 | 54.0 | 6.38e-01 | 75.4% | 100.0% |
| 3972100 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.80 | 63.0 | 6.01e-01 | 84.2% | 87.7% |
| 4123066 | 70.3.1.12 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › PF30644 | 0.78 | 53.0 | 4.74e-01 | 71.9% | 90.0% |
| 2389402 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.77 | 58.0 | 5.99e-01 | 89.5% | 85.2% |
| 5021658 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.71 | 46.0 | 4.86e-01 | 75.4% | 76.0% |
| 3522450 | 391.1.2.2 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › PSP94 | 0.66 | 41.0 | 3.69e-01 | 78.9% | 45.0% |
| 4940443 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.64 | 47.0 | 2.78e-01 | 77.2% | 19.0% |
| 3946545 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.64 | 45.0 | 4.00e-01 | 75.4% | 56.5% |
| 1714447 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.61 | 44.0 | 3.39e-01 | 77.2% | 98.5% |
| 3952707 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 3.81e-01 | 89.5% | 56.2% |
| 3969735 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 41.0 | 3.90e-01 | 75.4% | 92.9% |
| 4933970 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.58 | 34.0 | 3.36e-01 | 70.2% | 51.7% |
| 5019127 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.52 | 41.0 | 2.58e-01 | 96.5% | 16.0% |
| 3893152 | 209.1.1.4 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Xlink | 0.51 | 39.0 | 3.21e-01 | 84.2% | 82.7% |
| 3899009 | 209.1.1.4 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Xlink | 0.51 | 41.0 | 3.56e-01 | 91.2% | 86.3% |
| 3947188 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 42.0 | 3.55e-01 | 96.5% | 92.4% |
| 3908178 | 209.1.1.4 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Xlink | 0.51 | 39.0 | 3.22e-01 | 84.2% | 86.7% |
D3
medium
residues 425-482
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fm2A00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.50 | 35.0 | 2.71e-01 | 86.2% | 28.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507339 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 38.0 | 2.49e-01 | 79.3% | 54.7% |
| 3732427 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.51 | 38.0 | 2.87e-01 | 87.9% | 93.7% |
D4
medium
residues 580-646