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OP380604.1__UYD60152.1__OPFAMLBM_00131__00131

Bact-Vir

OP380604.1__UYD60152.1__OPFAMLBM_00131__00131

Identity

Accession:
OP380604 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-80
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.73 64.0 4.97e-01 94.4% 84.6%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.73 64.0 4.81e-01 95.8% 72.8%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 55.0 4.35e-01 86.1% 41.8%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.70 64.0 4.93e-01 100.0% 85.6%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.69 46.0 4.42e-01 76.4% 59.5%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.69 55.0 4.32e-01 88.9% 60.5%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.68 63.0 4.58e-01 100.0% 63.7%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.68 53.0 3.56e-01 84.7% 88.9%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.68 55.0 4.69e-01 91.7% 91.9%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.68 53.0 3.87e-01 84.7% 68.7%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.67 51.0 3.68e-01 81.9% 69.0%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.67 53.0 4.71e-01 90.3% 60.8%
3b5qA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.67 53.0 3.18e-01 84.7% 21.1%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.66 45.0 3.46e-01 70.8% 34.3%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 52.0 3.85e-01 84.7% 46.4%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 52.0 4.32e-01 87.5% 78.5%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.65 56.0 4.17e-01 94.4% 66.9%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 47.0 3.53e-01 76.4% 99.4%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 44.0 3.73e-01 70.8% 87.5%
3m2tA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 48.0 3.80e-01 80.6% 90.8%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 4.32e-01 88.9% 71.7%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.63 49.0 3.90e-01 83.3% 89.0%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.63 55.0 4.33e-01 100.0% 95.5%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 48.0 4.09e-01 83.3% 58.8%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 48.0 3.96e-01 80.6% 55.8%
3vsmA02 2.70.98.100 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Baculovirus E66 occlusion-derived virus envelope protein, domain 2 0.62 49.0 3.65e-01 87.5% 87.5%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.61 53.0 4.29e-01 95.8% 75.5%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 49.0 4.04e-01 86.1% 61.7%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 54.0 4.57e-01 100.0% 69.4%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.56e-01 86.1% 71.5%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.60 54.0 3.62e-01 100.0% 40.4%
4a9cA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 51.0 3.44e-01 97.2% 61.2%
3sh4A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.56e-01 91.7% 63.1%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 47.0 3.62e-01 86.1% 42.7%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.59 46.0 3.54e-01 83.3% 69.9%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 47.0 3.39e-01 86.1% 61.5%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 44.0 3.71e-01 80.6% 55.0%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 48.0 3.43e-01 98.6% 88.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.91e-01 70.8% 70.4%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 48.0 3.83e-01 93.1% 86.5%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 49.0 3.76e-01 100.0% 54.7%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 3.56e-01 91.7% 75.4%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 48.0 3.31e-01 95.8% 51.1%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 41.0 3.36e-01 87.5% 41.0%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 49.0 3.27e-01 100.0% 40.2%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 48.0 3.21e-01 100.0% 39.4%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.35e-01 91.7% 34.8%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 51.0 3.67e-01 100.0% 69.9%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.54 45.0 3.63e-01 93.1% 83.2%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.45e-01 86.1% 65.2%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.56e-01 100.0% 83.4%
1mi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.98e-01 93.1% 84.8%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 44.0 3.02e-01 91.7% 56.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.97e-01 97.2% 79.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3242741 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.85 56.0 3.68e-01 79.2% 18.6%
4023264 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.84 66.0 4.99e-01 83.3% 61.9%
3261967 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.83 58.0 3.94e-01 72.2% 25.3%
3812869 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.82 60.0 5.33e-01 76.4% 59.0%
3233897 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.82 54.0 4.51e-01 86.1% 40.8%
3196366 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.80 64.0 4.59e-01 83.3% 77.8%
3382987 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.79 54.0 3.48e-01 70.8% 97.3%
4008120 5.1.5.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.77 64.0 5.33e-01 88.9% 90.0%
5011042 3692.1.1.0 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.77 68.0 5.47e-01 94.4% 78.5%
3739965 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.77 61.0 3.79e-01 84.7% 42.8%
5034864 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.76 52.0 3.45e-01 70.8% 98.8%
5038572 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.75 60.0 4.74e-01 87.5% 64.0%
5082343 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.74 59.0 4.04e-01 94.4% 26.5%
3506427 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.74 66.0 5.41e-01 95.8% 89.6%
3644145 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.74 52.0 3.33e-01 73.6% 36.1%
5044469 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.72 54.0 4.40e-01 79.2% 93.8%
3990496 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 61.0 6.25e-01 91.7% 100.0%
3813951 241.15.1.2 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.72 58.0 4.40e-01 84.7% 54.8%
3474457 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.72 54.0 4.88e-01 87.5% 60.0%
3221927 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.71 53.0 3.45e-01 83.3% 19.3%
2336349 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.71 51.0 4.73e-01 75.0% 77.5%
4014909 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.71 60.0 4.21e-01 90.3% 53.4%
3212817 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 55.0 4.30e-01 83.3% 40.0%
3180248 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.71 53.0 4.75e-01 79.2% 97.0%
5059102 241.1.1.30 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 0.71 57.0 4.46e-01 86.1% 69.7%
4128674 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.71 59.0 4.15e-01 90.3% 98.1%
4956163 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.69 58.0 4.27e-01 90.3% 48.3%
5082492 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 47.0 4.42e-01 70.8% 94.1%
3701925 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.68 54.0 4.53e-01 86.1% 57.5%
5023993 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.68 62.0 4.31e-01 100.0% 92.7%
4954308 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.67 62.0 4.33e-01 100.0% 93.5%
3782244 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.66 53.0 4.74e-01 86.1% 72.0%
5025460 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 49.0 5.15e-01 76.4% 95.4%
3824321 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 46.0 4.25e-01 72.2% 91.1%
5043752 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.70e-01 88.9% 34.7%
3649973 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.65 58.0 3.63e-01 100.0% 42.1%
3220053 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.64 49.0 3.98e-01 80.6% 80.8%
5080576 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.63 48.0 3.55e-01 93.1% 29.9%
4991564 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.63 51.0 3.90e-01 86.1% 63.9%
4991973 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 55.0 3.58e-01 93.1% 36.4%
3215228 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.62 47.0 3.97e-01 81.9% 85.8%
4025950 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 56.0 3.92e-01 98.6% 35.7%
4224286 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.61 54.0 4.22e-01 100.0% 92.5%
4025360 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.61 54.0 4.22e-01 100.0% 74.2%
3287954 10.12.1.75 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding_2 0.61 50.0 3.62e-01 91.7% 57.6%
3396749 5.1.5.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.61 55.0 3.50e-01 100.0% 39.4%
4950432 210.1.1.5 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.61 51.0 3.72e-01 100.0% 34.7%
3979066 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.60 48.0 3.38e-01 84.7% 79.0%
3345486 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.60 53.0 3.45e-01 100.0% 41.5%
3217795 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.60 45.0 3.79e-01 81.9% 85.6%
4972328 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.59 46.0 4.63e-01 100.0% 81.3%
4023075 5.1.4.383 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VPS11_N 0.59 52.0 3.44e-01 100.0% 40.3%
3802525 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.20e-01 94.4% 30.7%
3240153 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.58 43.0 3.67e-01 81.9% 86.4%
5060431 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 52.0 3.27e-01 100.0% 31.6%
3407758 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 52.0 4.41e-01 100.0% 75.7%
5053021 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.57 48.0 4.46e-01 93.1% 83.3%
3899369 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 51.0 3.99e-01 100.0% 60.7%
3216472 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.56 46.0 3.85e-01 91.7% 85.6%