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OP380604.1__UYD60241.1__OPFAMLBM_00242__00220

Bact-Vir

OP380604.1__UYD60241.1__OPFAMLBM_00242__00220

Identity

Accession:
OP380604 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.01e-01 100.0% 75.0%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.14e-01 100.0% 47.1%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 47.0 4.84e-01 100.0% 81.4%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.65 47.0 2.92e-01 76.6% 25.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 4.98e-01 93.8% 100.0%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 39.0 4.04e-01 73.4% 64.5%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 5.13e-01 98.4% 100.0%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 44.0 4.81e-01 90.6% 94.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 4.92e-01 100.0% 87.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 5.06e-01 100.0% 91.2%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 4.72e-01 100.0% 83.8%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.94e-01 100.0% 98.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.92e-01 100.0% 98.2%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 4.74e-01 100.0% 93.2%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 39.0 4.26e-01 89.1% 91.5%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.59 47.0 3.29e-01 90.6% 46.5%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 38.0 2.97e-01 82.8% 31.3%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 4.29e-01 100.0% 67.9%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.66e-01 100.0% 93.3%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.58 49.0 4.25e-01 100.0% 65.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 46.0 3.80e-01 90.6% 79.0%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.58e-01 78.1% 96.1%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.78e-01 96.9% 100.0%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.67e-01 100.0% 95.2%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 38.0 3.49e-01 100.0% 52.9%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.13e-01 100.0% 73.7%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 3.99e-01 98.4% 68.8%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.55 45.0 3.19e-01 92.2% 80.5%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.55 38.0 3.22e-01 75.0% 73.7%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.52e-01 90.6% 74.6%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 39.0 4.16e-01 89.1% 87.5%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 45.0 3.61e-01 92.2% 85.2%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.18e-01 93.8% 100.0%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.54 36.0 3.22e-01 70.3% 75.7%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 4.41e-01 100.0% 95.2%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.25e-01 95.3% 54.4%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 45.0 4.32e-01 100.0% 89.2%
3kd9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 3.38e-01 98.4% 49.7%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 35.0 3.74e-01 87.5% 92.2%
2b9wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.06e-01 95.3% 61.9%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.52 36.0 2.69e-01 82.8% 25.8%
4j31A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.71e-01 95.3% 43.4%
4ak1A01 2.60.40.2710 Mainly Beta › Sandwich › Immunoglobulin-like › BT4661 domain 1 0.52 38.0 3.45e-01 82.8% 90.5%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.90e-01 90.6% 75.7%
4depC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.30e-01 81.2% 84.3%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 35.0 3.44e-01 73.4% 100.0%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.78e-01 93.8% 91.9%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 39.0 2.60e-01 89.1% 92.7%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 34.0 3.26e-01 84.4% 59.2%
4lxqB00 3.40.50.12230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 2.69e-01 89.1% 25.2%
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 40.0 3.79e-01 87.5% 73.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 40.0 3.94e-01 89.1% 87.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2575643 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 46.0 4.57e-01 100.0% 69.6%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.25e-01 100.0% 96.7%
3929784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 46.0 5.03e-01 95.3% 100.0%
3567457 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 50.0 4.87e-01 100.0% 81.4%
4959077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.42e-01 100.0% 100.0%
3519861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.67e-01 98.4% 85.0%
3903323 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 48.0 4.57e-01 100.0% 73.3%
3692073 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 49.0 4.77e-01 98.4% 81.4%
3911321 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 48.0 4.47e-01 98.4% 68.8%
4056584 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 48.0 4.51e-01 100.0% 70.0%
3214149 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 47.0 4.70e-01 96.9% 83.1%
3585447 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 48.0 4.54e-01 100.0% 71.2%
4119802 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 48.0 4.81e-01 100.0% 86.2%
3747208 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 46.0 4.34e-01 100.0% 67.5%
3846069 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 47.0 4.77e-01 100.0% 86.2%
3898363 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 47.0 4.66e-01 100.0% 80.0%
3411657 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.60 48.0 3.14e-01 89.1% 28.3%
3906249 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 47.0 4.54e-01 100.0% 74.7%
3543889 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 48.0 2.96e-01 100.0% 13.8%
4020558 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.82e-01 100.0% 89.2%
3575263 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 45.0 4.56e-01 100.0% 83.1%
1545880 4.1.1.278 beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.60 51.0 4.83e-01 100.0% 78.8%
3755099 604.1.1.97 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.60 48.0 4.44e-01 100.0% 68.2%
3399284 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 48.0 4.81e-01 100.0% 87.7%
4483819 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 48.0 4.68e-01 100.0% 81.4%
3259033 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 47.0 4.89e-01 100.0% 95.0%
3270547 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 47.0 4.76e-01 100.0% 87.7%
3748846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 46.0 4.61e-01 100.0% 86.2%
3561013 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 47.0 4.49e-01 100.0% 76.0%
3895391 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 46.0 4.38e-01 100.0% 71.2%
3573775 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 46.0 4.58e-01 100.0% 86.2%
3899237 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.58 45.0 3.84e-01 85.9% 56.4%
3269589 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 47.0 4.66e-01 100.0% 85.7%
3542245 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 45.0 4.42e-01 100.0% 81.4%
4130681 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.57 39.0 3.71e-01 100.0% 61.3%
3737825 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 43.0 4.58e-01 95.3% 100.0%
3700863 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 41.0 3.55e-01 76.6% 73.7%
3625909 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 43.0 4.12e-01 98.4% 70.0%
3933965 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 44.0 4.61e-01 98.4% 100.0%
4602101 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 48.0 4.79e-01 100.0% 96.9%
4034521 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.55 47.0 4.09e-01 96.9% 87.0%
4019954 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.55 45.0 2.80e-01 90.6% 25.5%
4569733 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.55 45.0 3.54e-01 92.2% 87.9%
3899829 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 47.0 4.46e-01 100.0% 82.7%
5028765 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 41.0 3.14e-01 82.8% 65.3%
3737927 220.1.1.294 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.54 45.0 3.82e-01 95.3% 80.9%
5044987 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.83e-01 93.8% 65.7%
4030047 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.76e-01 92.2% 70.3%
4995072 101.41.1.0 alpha arrays › HTH › MRB1590 C-terminal domain › MRB1590 C-terminal domain 0.53 39.0 3.40e-01 78.1% 90.0%
3940847 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 44.0 3.72e-01 93.8% 75.5%
5062211 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 45.0 3.19e-01 95.3% 69.5%
4307219 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.53 41.0 4.32e-01 95.3% 100.0%
3734754 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 44.0 2.89e-01 95.3% 48.6%
3314585 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 43.0 2.90e-01 90.6% 28.2%
4969673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.75e-01 90.6% 35.0%
3941913 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 38.0 4.06e-01 96.9% 96.4%
3620552 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 37.0 3.92e-01 96.9% 100.0%
4174179 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 37.0 3.98e-01 93.8% 100.0%
4276957 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 38.0 3.96e-01 98.4% 96.4%
3696098 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 42.0 2.74e-01 95.3% 55.8%
2834165 3740.1.1.1 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.51 42.0 2.79e-01 93.8% 51.8%
4351809 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 39.0 3.99e-01 96.9% 91.7%
3264437 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.29e-01 82.8% 86.7%
3582026 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.50 40.0 3.74e-01 89.1% 90.0%