←Back to structures
OP380606.1__UYD60741.1__NHNEHLNL_00145__00145
Bact-VirOP380606.1__UYD60741.1__NHNEHLNL_00145__00145
Identity
- Accession:
- OP380606 ↗
- Kingdom:
- phage
Quality
92.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Biquartavirus›
Aeromonas_phage_avDM1
TaxID: 3246724
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-116
Domain cluster:
rep: OM982621.1__UOL48705.1__X__00110__D10-66_78-98
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10789.15 best | Phage_RpbA | 135.4 | 1.10e-39 | 100.0% | 88.0% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.73 | 38.0 | 3.77e-01 | 72.2% | 48.5% |
| 6bldA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 49.0 | 3.21e-01 | 86.6% | 79.2% |
| 4lxjA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 46.0 | 3.05e-01 | 80.4% | 96.5% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 27.0 | 2.93e-01 | 79.4% | 50.0% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 27.0 | 3.34e-01 | 85.6% | 68.3% |
| 3owaB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 46.0 | 3.97e-01 | 88.7% | 79.0% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 45.0 | 3.47e-01 | 85.6% | 69.6% |
| 5nl9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 28.0 | 3.08e-01 | 84.5% | 57.1% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.56 | 49.0 | 3.70e-01 | 97.9% | 41.6% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.55 | 42.0 | 3.88e-01 | 85.6% | 63.2% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 43.0 | 3.44e-01 | 94.8% | 42.1% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.54 | 49.0 | 3.94e-01 | 100.0% | 53.9% |
| 5i9eA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 43.0 | 4.11e-01 | 95.9% | 73.5% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 43.0 | 3.46e-01 | 96.9% | 43.7% |
| 3kdqA00 | 6.10.320.10 | Special › Helix non-globular › Ferritin › | 0.53 | 39.0 | 3.31e-01 | 76.3% | 49.3% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 43.0 | 4.04e-01 | 85.6% | 99.2% |
| 5oyhD00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 42.0 | 3.41e-01 | 97.9% | 46.5% |
| 2d7vB00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 37.0 | 3.22e-01 | 76.3% | 90.8% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3328801 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.66 | 49.0 | 3.17e-01 | 79.4% | 63.2% |
| 4976626 | 3714.1.1.0 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain | 0.66 | 45.0 | 3.40e-01 | 71.1% | 58.2% |
| 3321176 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.64 | 53.0 | 3.50e-01 | 92.8% | 61.6% |
| 3548677 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.63 | 47.0 | 3.62e-01 | 100.0% | 34.5% |
| 5019671 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.62 | 48.0 | 3.49e-01 | 82.5% | 72.3% |
| 3937537 | 3755.3.1.462 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Pinin_SDK_memA | 0.60 | 44.0 | 3.30e-01 | 94.8% | 32.0% |
| 3716174 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.59 | 43.0 | 4.15e-01 | 76.3% | 76.4% |
| 4310296 | 109.4.1.1690 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_17, TPR_16 | 0.58 | 41.0 | 2.86e-01 | 75.3% | 50.4% |
| 4033043 | 616.1.1.41 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Terminase_4 | 0.58 | 34.0 | 3.59e-01 | 78.4% | 64.4% |
| 4067342 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.58 | 42.0 | 2.84e-01 | 76.3% | 21.8% |
| 3611776 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 44.0 | 3.87e-01 | 80.4% | 57.1% |
| 3966249 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.57 | 44.0 | 3.73e-01 | 80.4% | 69.7% |
| 3923920 | 148.1.1.8 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa | 0.57 | 45.0 | 4.46e-01 | 92.8% | 79.0% |
| 3826145 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.56 | 44.0 | 3.27e-01 | 81.4% | 59.1% |
| 3712415 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 47.0 | 3.78e-01 | 91.8% | 90.8% |
| 3788625 | 5001.1.1.120 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TRP | 0.56 | 45.0 | 2.96e-01 | 85.6% | 32.2% |
| 4453655 | 131.1.1.13 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_5 | 0.56 | 39.0 | 3.07e-01 | 95.9% | 35.4% |
| 4965179 | 5040.1.1.0 ↗ | extended segments › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region › Cytochrome c oxidase subunit II-like, transmembrane region | 0.56 | 36.0 | 3.99e-01 | 72.2% | 82.7% |
| 3588933 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.56 | 48.0 | 3.72e-01 | 93.8% | 79.1% |
| 4011414 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 44.0 | 3.37e-01 | 83.5% | 46.0% |
| 3213954 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.56 | 38.0 | 3.08e-01 | 71.1% | 38.9% |
| 3575264 | 604.12.1.61 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Clc-like | 0.56 | 42.0 | 3.97e-01 | 83.5% | 67.0% |
| 3930773 | 633.23.1.17 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA | 0.55 | 44.0 | 3.21e-01 | 85.6% | 77.8% |
| 4003270 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.55 | 38.0 | 2.70e-01 | 71.1% | 41.2% |
| 3400876 | 108.2.1.2 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › OBP47_like | 0.55 | 44.0 | 3.65e-01 | 85.6% | 92.9% |
| 3574069 | 604.12.1.62 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA | 0.55 | 41.0 | 3.79e-01 | 82.5% | 60.8% |
| 3591919 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 40.0 | 2.71e-01 | 77.3% | 50.1% |
| 3799917 | 633.23.1.17 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA | 0.55 | 45.0 | 3.29e-01 | 87.6% | 81.2% |
| 3242949 | 633.23.1.17 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA | 0.54 | 43.0 | 3.16e-01 | 85.6% | 78.9% |
| 3498690 | 109.4.1.76 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Menin | 0.54 | 41.0 | 2.92e-01 | 79.4% | 30.4% |
| 3795771 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.54 | 44.0 | 2.96e-01 | 88.7% | 45.2% |
| 3717906 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 44.0 | 3.44e-01 | 93.8% | 40.5% |
| 4857248 | 5064.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL | 0.53 | 41.0 | 3.74e-01 | 87.6% | 60.2% |
| 3716059 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.53 | 48.0 | 2.97e-01 | 100.0% | 83.5% |
| 5057313 | 3352.1.1.2 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 | 0.53 | 46.0 | 3.13e-01 | 99.0% | 41.3% |
| 4034176 | 2007.6.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS | 0.52 | 38.0 | 3.10e-01 | 75.3% | 78.7% |
| 3273480 | 109.4.1.546 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 | 0.52 | 37.0 | 3.15e-01 | 79.4% | 41.7% |
| 3788066 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.52 | 42.0 | 3.33e-01 | 85.6% | 44.3% |
| 3788888 | 301.8.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase | 0.52 | 37.0 | 3.43e-01 | 92.8% | 58.3% |
| 3713159 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.52 | 41.0 | 3.86e-01 | 85.6% | 67.5% |
| 5003168 | 5069.1.3.132 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Yip1 | 0.52 | 46.0 | 3.65e-01 | 100.0% | 87.3% |
| 4946158 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 44.0 | 3.49e-01 | 92.8% | 87.7% |
| 4043003 | 601.7.1.6 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase | 0.52 | 35.0 | 2.92e-01 | 79.4% | 38.8% |
| 2970332 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.51 | 37.0 | 3.31e-01 | 76.3% | 83.2% |
| 3680927 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.50 | 43.0 | 3.04e-01 | 95.9% | 94.3% |
| 4957459 | 301.8.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N | 0.50 | 37.0 | 3.61e-01 | 99.0% | 70.5% |