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OP380606.1__UYD60768.1__NHNEHLNL_00172__00172

Bact-Vir

OP380606.1__UYD60768.1__NHNEHLNL_00172__00172

Identity

Accession:
OP380606 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-74
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 42.0 3.88e-01 70.6% 89.0%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.60 46.0 4.23e-01 85.3% 96.8%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.60 51.0 3.63e-01 100.0% 62.4%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.60 50.0 3.63e-01 100.0% 78.8%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.43e-01 98.5% 72.5%
6vudA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 50.0 4.83e-01 100.0% 84.0%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 35.0 3.55e-01 72.1% 58.0%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 47.0 4.05e-01 94.1% 55.4%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.58 43.0 2.87e-01 79.4% 81.3%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 46.0 3.92e-01 89.7% 74.8%
1ynjD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 40.0 4.49e-01 83.8% 94.3%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.57 38.0 3.63e-01 70.6% 82.1%
1dd5A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.57 48.0 4.64e-01 100.0% 84.0%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 43.0 3.57e-01 88.2% 81.8%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.92e-01 100.0% 60.4%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 41.0 3.63e-01 85.3% 53.9%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.55 36.0 3.69e-01 70.6% 69.2%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.55 39.0 3.44e-01 76.5% 48.6%
3q7yA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 44.0 3.71e-01 91.2% 89.5%
3r6aB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 42.0 3.53e-01 85.3% 95.9%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 39.0 3.31e-01 83.8% 43.7%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 40.0 3.90e-01 97.1% 71.1%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 36.0 2.58e-01 70.6% 95.8%
3su0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 43.0 3.78e-01 94.1% 70.5%
1mbmA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 43.0 4.23e-01 100.0% 81.6%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 42.0 3.65e-01 91.2% 91.2%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.53 39.0 3.85e-01 95.6% 72.4%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 39.0 3.72e-01 85.3% 71.8%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 39.0 3.84e-01 98.5% 73.7%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 4.04e-01 100.0% 86.2%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 36.0 2.79e-01 73.5% 33.7%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 37.0 3.22e-01 75.0% 72.5%
7vcnA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.52 35.0 3.09e-01 94.1% 46.6%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 40.0 2.70e-01 89.7% 92.2%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.57e-01 85.3% 96.8%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 39.0 3.40e-01 91.2% 79.2%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 31.0 3.42e-01 94.1% 83.3%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.65e-01 92.6% 72.9%
2zvbA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.50 40.0 3.39e-01 94.1% 55.0%
1vw4Z00 4.10.410.60 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.50 31.0 3.27e-01 100.0% 69.4%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.50 43.0 3.25e-01 98.5% 72.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 34.0 3.46e-01 94.1% 72.1%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5066572 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.66 48.0 4.21e-01 100.0% 50.5%
4937620 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.66 48.0 4.76e-01 100.0% 74.3%
4978265 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.65 47.0 3.60e-01 100.0% 33.1%
5003276 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.63 45.0 4.64e-01 82.4% 80.0%
3938510 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.61 47.0 4.79e-01 83.8% 89.2%
3291702 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 48.0 3.76e-01 89.7% 69.3%
5052051 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.59 45.0 4.06e-01 85.3% 71.7%
3599505 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.57 44.0 4.04e-01 85.3% 92.2%
5042293 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.57 43.0 4.06e-01 85.3% 76.5%
4938623 881.1.1.45 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF26686 0.57 47.0 3.76e-01 100.0% 84.2%
4989408 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.56 42.0 3.86e-01 97.1% 60.7%
4975474 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.56 41.0 4.25e-01 83.8% 84.6%
4947136 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.56 42.0 3.95e-01 85.3% 70.0%
5055408 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.56 42.0 3.94e-01 85.3% 72.2%
3615545 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.56 43.0 3.78e-01 85.3% 69.5%
4453444 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.55 42.0 4.06e-01 98.5% 73.3%
5034417 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.55 42.0 3.90e-01 85.3% 69.7%
5025255 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.55 40.0 3.83e-01 95.6% 66.3%
4946019 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.55 40.0 3.81e-01 83.8% 63.3%
3378278 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.55 41.0 2.59e-01 83.8% 75.9%
4958213 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 41.0 3.81e-01 85.3% 64.2%
5042313 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 40.0 3.90e-01 97.1% 72.0%
5008645 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 40.0 3.88e-01 98.5% 72.0%
5040422 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 42.0 4.07e-01 97.1% 76.0%
3387934 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 41.0 3.77e-01 85.3% 68.4%
3869277 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.54 41.0 3.09e-01 85.3% 38.9%
4940833 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 41.0 3.88e-01 85.3% 68.2%
5063688 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.54 40.0 3.70e-01 97.1% 61.8%
5077873 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 39.0 3.74e-01 95.6% 67.1%
3488905 11.1.1.430 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta 0.53 40.0 3.22e-01 94.1% 39.3%
5018743 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 39.0 3.84e-01 97.1% 72.0%
5045767 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 42.0 3.97e-01 94.1% 75.6%
5012053 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 40.0 3.89e-01 97.1% 74.3%
5035567 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 40.0 4.00e-01 85.3% 88.4%
4975323 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 39.0 3.71e-01 85.3% 66.7%
4957418 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 39.0 3.85e-01 97.1% 73.3%
135285 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 39.0 3.82e-01 95.6% 70.5%
3509963 11.1.1.430 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta 0.53 42.0 3.91e-01 98.5% 67.8%
4952214 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.53 40.0 3.91e-01 97.1% 74.7%
3311403 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.52 40.0 2.54e-01 86.8% 68.5%
4984041 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 40.0 3.92e-01 98.5% 76.0%
4951199 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 38.0 3.76e-01 97.1% 72.0%
5078626 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 40.0 3.89e-01 98.5% 75.7%
5049033 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 39.0 3.87e-01 97.1% 74.7%
4255330 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 39.0 3.68e-01 85.3% 69.7%
5020812 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 39.0 3.82e-01 97.1% 73.3%
4973544 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 39.0 3.87e-01 98.5% 74.7%
4946890 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.52 39.0 3.68e-01 85.3% 65.6%
5078178 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 40.0 3.93e-01 97.1% 76.0%
5064269 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 38.0 3.68e-01 85.3% 70.6%
5048137 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 38.0 3.76e-01 95.6% 74.0%
5079888 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 39.0 3.79e-01 97.1% 71.8%
5061905 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.52 39.0 3.77e-01 85.3% 71.2%
1184376 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 38.0 3.52e-01 83.8% 58.8%
4952478 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.52 39.0 3.82e-01 97.1% 74.7%
4978863 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.51 39.0 3.58e-01 85.3% 61.1%
4948221 331.1.1.29 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Fer4_10 0.51 40.0 3.84e-01 94.1% 80.0%
4973167 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.51 38.0 3.64e-01 85.3% 68.2%
3385858 4281.1.1.1 a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p 0.50 31.0 3.35e-01 100.0% 74.1%
3926416 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.50 42.0 3.69e-01 98.5% 90.0%
4665984 4281.1.1.0 a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p 0.50 31.0 3.35e-01 100.0% 74.1%