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OP380606.1__UYD60784.1__NHNEHLNL_00188__00188

Bact-Vir

OP380606.1__UYD60784.1__NHNEHLNL_00188__00188

Identity

Accession:
OP380606 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Biquartavirus› Aeromonas_phage_avDM1

TaxID: 3246724

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
Domain cluster: rep: MW239124.1__QQG32192.1__CkP1_0225__00225__D6-80
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 50.0 4.33e-01 82.3% 76.0%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 50.0 4.25e-01 83.5% 90.7%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 49.0 4.20e-01 83.5% 87.5%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 47.0 3.36e-01 83.5% 47.9%
1tkeA03 3.30.54.20 Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › 0.59 38.0 4.29e-01 72.2% 89.7%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.59 45.0 3.90e-01 83.5% 66.1%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 46.0 4.06e-01 87.3% 94.2%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 46.0 3.66e-01 89.9% 66.3%
1mswD01 1.10.1320.10 Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain 0.56 47.0 3.26e-01 100.0% 53.5%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.56e-01 100.0% 78.3%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 46.0 3.64e-01 94.9% 95.6%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 46.0 3.37e-01 96.2% 95.9%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.55 41.0 3.65e-01 83.5% 66.7%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 45.0 3.60e-01 94.9% 95.9%
3m3pA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 44.0 3.12e-01 91.1% 83.5%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.22e-01 83.5% 53.7%
1v84A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 41.0 3.02e-01 89.9% 44.1%
4kg0A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 43.0 3.62e-01 100.0% 72.5%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 3.17e-01 83.5% 53.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 46.0 3.96e-01 100.0% 76.2%
1yaxB00 3.30.450.140 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain 0.50 36.0 3.13e-01 78.5% 50.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033841 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.63e-01 100.0% 100.0%
4253206 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.67 53.0 5.11e-01 100.0% 76.7%
3592013 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.52e-01 100.0% 61.7%
5059299 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.61 46.0 4.08e-01 83.5% 91.7%
4987602 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.60 46.0 4.00e-01 83.5% 92.0%
3858885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 4.26e-01 100.0% 96.4%
4178829 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.58 45.0 3.95e-01 87.3% 92.8%
3270519 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 40.0 4.36e-01 100.0% 90.8%
3626193 5090.1.1.8 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › EFF-AFF 0.57 50.0 3.20e-01 97.5% 48.9%
3931969 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.78e-01 83.5% 91.2%
3172098 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.57 43.0 4.21e-01 91.1% 73.3%
3015241 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.56 44.0 3.97e-01 89.9% 95.0%
4680268 3820.1.1.2 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_C 0.55 47.0 4.31e-01 100.0% 78.0%
3759277 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 38.0 3.17e-01 72.2% 83.2%
3803894 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.54 30.0 3.10e-01 74.7% 53.3%
4978477 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 40.0 3.44e-01 82.3% 48.9%
3476418 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 47.0 3.99e-01 100.0% 73.3%
3946017 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.53 41.0 3.34e-01 83.5% 51.6%
3552001 220.1.1.6 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID,DAB2_SBM 0.53 47.0 3.80e-01 100.0% 67.1%
3927330 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 40.0 4.01e-01 94.9% 78.8%
3905551 220.1.1.6 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID,DAB2_SBM 0.52 47.0 3.69e-01 100.0% 63.0%
1045 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.52 36.0 4.00e-01 100.0% 91.9%
3985367 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.52 39.0 3.88e-01 98.7% 77.1%
4141832 865.1.1.0 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.51 37.0 3.55e-01 77.2% 91.6%
3389250 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 40.0 3.20e-01 83.5% 52.9%
4520085 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.51 33.0 3.88e-01 100.0% 96.4%
5045169 213.1.1.19 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.51 39.0 3.28e-01 83.5% 50.0%