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OP381185.1__UXM65463.1__X__00019

Bact-Vir

OP381185.1__UXM65463.1__X__00019

Identity

Accession:
OP381185 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.89 64.0 5.10e-01 98.2% 41.0%
1f1mA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.87 56.0 3.95e-01 100.0% 23.5%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.80 58.0 5.84e-01 100.0% 75.9%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.78 73.0 5.84e-01 100.0% 56.3%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.78 73.0 5.53e-01 100.0% 55.5%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.74 68.0 4.18e-01 100.0% 32.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.73 69.0 5.52e-01 100.0% 56.9%
4ie5A02 1.20.58.1470 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain 0.71 62.0 4.63e-01 100.0% 40.3%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.71 65.0 4.68e-01 100.0% 45.4%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.70 64.0 5.53e-01 100.0% 74.4%
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 50.0 3.73e-01 93.0% 32.1%
2ccqA00 1.20.58.2190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 44.0 3.66e-01 73.7% 38.4%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.67 61.0 3.53e-01 100.0% 35.2%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 53.0 3.91e-01 93.0% 81.9%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 57.0 4.86e-01 100.0% 75.5%
4uavA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 56.0 4.84e-01 96.5% 89.4%
7mdhA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.63 49.0 3.57e-01 89.5% 35.8%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 50.0 4.22e-01 89.5% 64.6%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 53.0 4.23e-01 98.2% 71.4%
1n7hB01 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.62 49.0 4.03e-01 86.0% 90.1%
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.61 54.0 3.31e-01 98.2% 41.6%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.03e-01 78.9% 67.5%
1b8pA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.60 48.0 3.51e-01 93.0% 36.0%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.79e-01 86.0% 46.2%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 53.0 4.13e-01 100.0% 50.0%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.59 49.0 3.70e-01 98.2% 75.7%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.58 47.0 3.92e-01 89.5% 52.1%
2e7zA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 41.0 2.58e-01 73.7% 50.0%
4rz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 2.90e-01 84.2% 32.0%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 44.0 3.10e-01 84.2% 69.5%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.57 48.0 3.81e-01 94.7% 49.6%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.57 46.0 4.36e-01 87.7% 97.0%
1ka1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 48.0 3.27e-01 96.5% 42.9%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 49.0 3.34e-01 100.0% 34.8%
1llaA03 1.10.1280.10 Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase 0.56 49.0 3.19e-01 98.2% 22.5%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.56 41.0 3.77e-01 78.9% 72.0%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.56 45.0 3.21e-01 93.0% 43.1%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 48.0 3.64e-01 100.0% 40.3%
4bqqA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.55 49.0 3.68e-01 100.0% 89.3%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.38e-01 82.5% 81.7%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 37.0 3.83e-01 71.9% 83.6%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.53 45.0 3.08e-01 93.0% 35.1%
2jroA01 3.30.1910.10 Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain 0.53 42.0 4.03e-01 91.2% 75.4%
3v98A03 3.10.450.60 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.00e-01 77.2% 100.0%
2ieeA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 44.0 3.37e-01 94.7% 67.4%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 37.0 2.99e-01 78.9% 92.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517171 604.8.1.3 alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 0.82 71.0 4.71e-01 100.0% 25.7%
3412885 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.81 64.0 6.06e-01 100.0% 72.3%
3632380 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.76 69.0 4.46e-01 100.0% 56.6%
3183367 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.75 55.0 3.49e-01 100.0% 16.7%
4393385 1032.1.1.1 alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › TcdA_TcdB_pore 0.73 60.0 4.14e-01 89.5% 35.0%
3290286 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.73 63.0 4.34e-01 100.0% 29.7%
3195042 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.73 66.0 3.81e-01 96.5% 13.3%
3220023 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.71 64.0 4.64e-01 100.0% 43.3%
3411459 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.71 61.0 5.63e-01 100.0% 81.3%
3862747 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.70 63.0 5.52e-01 100.0% 69.4%
3756246 5086.1.1.117 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › WWC1 0.70 50.0 3.62e-01 91.2% 26.9%
3714005 5054.1.1.61 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › ELO 0.69 56.0 3.65e-01 100.0% 20.4%
3182185 5050.1.1.58 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.69 61.0 3.95e-01 100.0% 22.9%
3274487 605.1.1.155 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.69 57.0 4.21e-01 100.0% 34.3%
3656073 109.4.1.47 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.68 51.0 2.78e-01 98.2% 4.2%
3717340 605.1.1.155 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.68 56.0 4.01e-01 100.0% 30.0%
4014485 5044.1.1.0 extended segments › PsbZ-like › PsbZ-like › PsbZ-like 0.68 62.0 5.19e-01 100.0% 76.8%
3520592 109.4.1.47 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.68 51.0 2.76e-01 98.2% 4.3%
2724318 3747.1.1.2 a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.67 63.0 4.69e-01 100.0% 76.2%
3219908 109.4.1.80 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.66 58.0 4.04e-01 96.5% 31.8%
4889279 109.4.1.2103 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1, CRM1_C, CRM1_repeat, CRM1_repeat_2, CRM1_repeat_3 0.66 50.0 2.78e-01 98.2% 6.3%
3498520 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 46.0 2.85e-01 73.7% 76.7%
3271984 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.66 57.0 4.30e-01 100.0% 42.1%
4417765 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 57.0 4.26e-01 100.0% 41.5%
4086080 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.65 51.0 3.77e-01 87.7% 34.8%
3903618 219.1.1.54 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.64 53.0 3.35e-01 100.0% 17.9%
4141634 3236.2.1.8 alpha complex topology › Cation-proton antiporter › Sodium-dependent citrate symporter › Sodium-dependent citrate symporter › Asp-Al_Ex 0.63 53.0 3.34e-01 100.0% 57.1%
3611776 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 56.0 4.16e-01 98.2% 45.0%
4520394 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.63 53.0 4.98e-01 91.2% 84.1%
4250780 621.1.1.3 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.62 50.0 3.82e-01 98.2% 39.2%
3761056 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.62 51.0 4.39e-01 93.0% 58.8%
3937537 3755.3.1.462 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Pinin_SDK_memA 0.62 54.0 3.57e-01 100.0% 24.9%
3277618 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 49.0 4.54e-01 100.0% 69.3%
3986356 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.61 48.0 3.07e-01 86.0% 30.7%
4282188 5059.1.1.59 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EmrE 0.61 53.0 3.29e-01 100.0% 18.1%
5024287 103.5.1.11 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF2067 0.60 49.0 4.50e-01 94.7% 68.0%
3475659 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.60 51.0 3.40e-01 93.0% 25.7%
4268279 3227.1.1.1 alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC 0.60 48.0 2.92e-01 100.0% 12.9%
5001324 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.09e-01 93.0% 70.5%
5077287 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.59 52.0 3.36e-01 98.2% 65.3%
3355773 109.4.1.47 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.58 52.0 2.82e-01 100.0% 40.4%
3788612 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.58 50.0 2.93e-01 98.2% 32.2%
5074889 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.57 52.0 4.35e-01 100.0% 76.8%
4061362 327.4.1.1 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.56 46.0 3.80e-01 89.5% 78.0%
3726808 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.56 51.0 3.55e-01 100.0% 33.9%
3788383 316.1.1.14 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.56 45.0 2.78e-01 100.0% 60.6%
None 0.56 48.0 3.16e-01 98.2% 32.8%
3447438 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.56 43.0 3.49e-01 84.2% 54.5%
3724382 3291.1.1.105 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Med14 0.55 49.0 3.59e-01 100.0% 36.8%
4982001 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.55 45.0 3.61e-01 100.0% 44.4%
4650117 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.55 42.0 3.73e-01 82.5% 70.0%
3979705 2484.1.1.248 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GpA_nuclease 0.54 44.0 2.90e-01 91.2% 40.8%
3219996 576.1.1.1 few secondary structure elements › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin 0.52 44.0 3.57e-01 98.2% 63.5%
4970833 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 39.0 3.70e-01 82.5% 74.3%