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OP394178.1__UWV19643.1__MaMV-DH010014__00014

Bact-Vir

OP394178.1__UWV19643.1__MaMV-DH010014__00014

Identity

Accession:
OP394178 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-49
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.86 68.0 4.70e-01 85.7% 28.9%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.82 60.0 5.68e-01 79.6% 68.3%
3e7qA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.82 65.0 4.20e-01 85.7% 28.8%
3cjdA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.81 64.0 4.26e-01 85.7% 65.4%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 67.0 5.62e-01 91.8% 75.6%
7cyuA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.80 63.0 5.98e-01 85.7% 77.2%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.79 59.0 4.67e-01 81.6% 49.5%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.79 68.0 5.25e-01 95.9% 45.1%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.79 67.0 4.07e-01 93.9% 20.3%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 64.0 5.30e-01 91.8% 71.3%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.78 61.0 5.56e-01 85.7% 67.2%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.78 57.0 3.43e-01 77.6% 13.8%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.77 65.0 6.39e-01 93.9% 88.7%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.77 62.0 4.80e-01 87.8% 50.5%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.77 58.0 3.48e-01 81.6% 15.9%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.76 58.0 5.06e-01 83.7% 60.0%
2e6oA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.76 65.0 5.38e-01 95.9% 56.3%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.76 57.0 4.96e-01 81.6% 62.7%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.74 53.0 4.42e-01 77.6% 44.3%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.74 64.0 4.64e-01 95.9% 72.3%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.74 57.0 4.96e-01 85.7% 55.8%
2cs1A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.73 62.0 5.06e-01 95.9% 53.3%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.73 62.0 5.28e-01 95.9% 62.0%
6fakA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 57.0 4.58e-01 87.8% 52.6%
1whuA00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.72 54.0 4.28e-01 83.7% 40.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.71 63.0 5.03e-01 100.0% 76.3%
7r97A01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.71 61.0 4.38e-01 100.0% 66.2%
2qvwA04 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.71 60.0 4.37e-01 100.0% 60.7%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.57e-01 93.9% 87.9%
3fghA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.70 58.0 5.22e-01 95.9% 67.2%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.70 60.0 5.62e-01 98.0% 78.7%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.74e-01 95.9% 90.9%
2oq1A02 1.10.930.10 Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 0.69 56.0 5.74e-01 93.9% 100.0%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.69 58.0 4.25e-01 100.0% 59.0%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.69 50.0 5.03e-01 83.7% 96.1%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.68 46.0 4.74e-01 93.9% 76.1%
5mmiJ02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.67 48.0 4.33e-01 77.6% 56.5%
1cm0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 55.0 3.88e-01 100.0% 29.0%
5eowA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 56.0 3.40e-01 100.0% 19.5%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 55.0 3.83e-01 100.0% 59.3%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 45.0 3.15e-01 75.5% 34.7%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.62 54.0 4.47e-01 100.0% 77.8%
1kl7A02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 50.0 3.20e-01 98.0% 57.9%
1lxlA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 45.0 2.88e-01 83.7% 19.0%
4i6vA02 1.10.2020.10 Mainly Alpha › Orthogonal Bundle › uronate isomerase, domain 2, chain A › uronate isomerase, domain 2, chain A 0.58 42.0 3.58e-01 79.6% 56.0%
1khcA02 1.10.720.50 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain 0.55 45.0 4.13e-01 98.0% 98.6%
2ko6A00 1.10.1580.20 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › Protein of unknown function DUF1040 0.55 40.0 3.44e-01 83.7% 60.7%
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.54 43.0 3.84e-01 98.0% 84.0%
2c2uA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 42.0 2.99e-01 87.8% 55.6%
3k9dA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 44.0 2.90e-01 100.0% 45.8%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 3.64e-01 83.7% 57.7%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.14e-01 93.9% 42.3%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4339297 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.93 75.0 4.82e-01 85.7% 21.5%
3426642 375.1.1.96 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY 0.90 71.0 7.11e-01 87.8% 82.0%
3634926 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.90 78.0 6.84e-01 93.9% 77.1%
3284564 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.88 69.0 4.89e-01 83.7% 32.1%
3809576 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.87 68.0 6.13e-01 83.7% 66.2%
3260615 103.4.1.5 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.86 74.0 6.07e-01 93.9% 65.9%
3235805 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.84 62.0 6.70e-01 81.6% 97.5%
3934795 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.84 63.0 6.28e-01 87.8% 78.0%
3742957 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.84 72.0 6.77e-01 95.9% 91.7%
3588902 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.83 64.0 4.54e-01 83.7% 30.7%
3648830 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.82 65.0 5.41e-01 87.8% 65.9%
4061431 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.81 72.0 7.15e-01 95.9% 98.0%
3589064 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.81 74.0 4.71e-01 100.0% 36.3%
3419147 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.81 70.0 5.63e-01 93.9% 51.1%
3598952 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.81 67.0 4.86e-01 91.8% 52.3%
3323413 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.81 69.0 5.69e-01 93.9% 54.1%
3398172 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.80 70.0 5.39e-01 95.9% 46.7%
3970007 3502.1.1.0 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein 0.80 63.0 5.47e-01 85.7% 57.3%
3240782 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.79 67.0 4.66e-01 91.8% 30.7%
3410442 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.79 69.0 5.03e-01 95.9% 38.4%
4543805 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.79 62.0 4.52e-01 85.7% 33.3%
3864894 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.79 68.0 5.57e-01 95.9% 54.1%
3498339 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 69.0 5.64e-01 95.9% 57.6%
3285015 191.1.1.23 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_22 0.78 62.0 4.55e-01 85.7% 34.4%
3878202 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 71.0 5.77e-01 98.0% 58.8%
3503648 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 70.0 6.49e-01 98.0% 85.0%
3705890 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 67.0 5.30e-01 98.0% 48.4%
3506153 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 68.0 5.66e-01 95.9% 59.0%
4034454 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.78 59.0 4.42e-01 83.7% 36.0%
3870636 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 58.0 5.27e-01 79.6% 61.5%
4929712 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.78 70.0 4.47e-01 100.0% 27.3%
3176953 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 65.0 5.76e-01 91.8% 65.7%
4344838 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 66.0 5.58e-01 93.9% 57.5%
3171915 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.78 66.0 5.46e-01 93.9% 54.1%
3930859 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.77 67.0 5.78e-01 95.9% 66.7%
2427 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.77 65.0 5.34e-01 95.9% 53.3%
3558741 376.1.3.80 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › HMG_box 0.76 63.0 6.56e-01 91.8% 100.0%
3642427 103.1.1.123 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PLAC8 0.76 56.0 4.67e-01 79.6% 50.6%
3518379 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.75 58.0 5.63e-01 85.7% 80.0%
3715528 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.75 65.0 5.02e-01 95.9% 58.1%
3893243 190.1.1.9 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_WDHD1 0.75 61.0 5.87e-01 89.8% 81.8%
185221 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.74 57.0 5.20e-01 85.7% 67.2%
3620454 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.74 63.0 4.46e-01 95.9% 32.7%
2665668 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.74 64.0 5.93e-01 95.9% 79.0%
4232288 4275.1.1.10 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › NifW 0.73 56.0 4.98e-01 83.7% 61.4%
3402349 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.72 61.0 5.80e-01 98.0% 80.0%
None 0.72 50.0 3.08e-01 73.5% 29.5%
4591229 190.1.1.8 alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.72 63.0 5.06e-01 98.0% 52.6%
3497163 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.71 60.0 5.15e-01 98.0% 62.5%
4327215 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.71 50.0 3.78e-01 75.5% 33.9%
3278450 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.70 50.0 4.21e-01 75.5% 48.8%
3967043 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.69 58.0 4.73e-01 95.9% 61.1%
3926804 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.66 56.0 4.70e-01 100.0% 93.3%
5030654 5073.1.1.11 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C 0.65 56.0 3.18e-01 100.0% 39.6%
3550406 541.1.1.0 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.63 49.0 4.95e-01 93.9% 96.0%
5058742 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.63 50.0 2.87e-01 91.8% 9.5%
4579424 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.61 54.0 3.43e-01 98.0% 32.1%
4039262 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.60 52.0 3.25e-01 100.0% 58.6%
3684651 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.59 47.0 4.11e-01 95.9% 67.1%