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OP413827.1__UZN24156.1__X__00054

Bact-Vir

OP413827.1__UZN24156.1__X__00054

Identity

Accession:
OP413827 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Efbeekayvirus› Klebsiella_phage_pKP-BM327-1.2

TaxID: 2984977

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: rep: OP413827.1__UZN24155.1__X__00053__D3-62
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.68 51.0 4.23e-01 80.0% 55.7%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.66 51.0 4.58e-01 82.5% 100.0%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.65 48.0 4.13e-01 80.0% 98.5%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.65 39.0 3.76e-01 70.0% 52.8%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 46.0 3.83e-01 76.2% 57.0%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 4.10e-01 76.2% 76.1%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 3.13e-01 81.2% 93.6%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 47.0 4.41e-01 82.5% 87.0%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 4.04e-01 75.0% 76.7%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.61 48.0 3.78e-01 86.3% 80.5%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 48.0 3.94e-01 90.0% 78.4%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.88e-01 96.2% 62.3%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 45.0 4.00e-01 85.0% 97.5%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 40.0 4.02e-01 72.5% 94.0%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 2.80e-01 71.2% 83.6%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.58 43.0 3.54e-01 80.0% 82.0%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 43.0 2.75e-01 82.5% 93.8%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 3.70e-01 95.0% 57.4%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 40.0 2.62e-01 75.0% 27.2%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.44e-01 90.0% 57.8%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 44.0 3.23e-01 85.0% 100.0%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.56 41.0 3.66e-01 80.0% 59.2%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 48.0 3.52e-01 100.0% 41.6%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.60e-01 95.0% 61.7%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.55 40.0 3.72e-01 77.5% 82.7%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.55 40.0 2.81e-01 80.0% 22.6%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 43.0 3.78e-01 86.3% 94.4%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.39e-01 88.7% 59.6%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 36.0 2.59e-01 70.0% 61.3%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 42.0 3.30e-01 85.0% 67.4%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 42.0 3.32e-01 86.3% 92.6%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.53 39.0 2.87e-01 81.2% 35.6%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.53 39.0 2.74e-01 81.2% 21.9%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.53 37.0 3.48e-01 71.2% 95.8%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 36.0 3.42e-01 70.0% 76.8%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 4.01e-01 77.5% 100.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 41.0 3.46e-01 87.5% 96.5%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 42.0 3.27e-01 90.0% 85.7%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.01e-01 87.5% 50.0%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.98e-01 87.5% 48.9%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.31e-01 70.0% 90.5%
2jo6A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 36.0 3.36e-01 76.2% 94.5%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.51 38.0 3.52e-01 81.2% 68.2%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 40.0 2.89e-01 88.7% 47.3%
2nn6B01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 41.0 3.04e-01 90.0% 76.6%
2nn6E00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 41.0 2.88e-01 90.0% 70.9%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 41.0 3.03e-01 90.0% 75.4%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.67e-01 90.0% 96.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
138730 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.65 39.0 3.76e-01 70.0% 52.8%
4247937 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.64 48.0 4.30e-01 80.0% 57.3%
3517350 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.64 46.0 3.03e-01 75.0% 37.2%
3480143 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.64 46.0 3.79e-01 77.5% 84.7%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.63 45.0 4.20e-01 75.0% 91.0%
3821429 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.62 46.0 3.69e-01 78.8% 67.5%
3394516 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.62 44.0 3.71e-01 76.2% 80.6%
3926363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 44.0 3.97e-01 76.2% 64.3%
3495361 5.1.4.402 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30552 0.62 49.0 3.11e-01 86.3% 88.7%
4986577 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.61 44.0 4.00e-01 76.2% 74.5%
3584285 5.1.11.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DPPIV_N 0.60 41.0 2.66e-01 71.2% 48.3%
3438374 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 42.0 2.78e-01 73.8% 48.2%
3484246 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 46.0 2.95e-01 81.2% 84.3%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 4.58e-01 73.8% 95.4%
164520 5.1.3.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mala_s_1-like 0.60 43.0 2.87e-01 76.2% 95.2%
3650304 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.59 35.0 3.95e-01 88.7% 78.3%
3415592 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.59 44.0 3.61e-01 80.0% 81.3%
3779783 5.1.4.325 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30552 0.59 41.0 2.67e-01 73.8% 45.6%
4081797 3860.1.1.158 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.59 45.0 3.77e-01 83.7% 51.0%
3577891 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 50.0 3.61e-01 95.0% 49.1%
4007983 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.58 43.0 4.09e-01 80.0% 66.3%
3266298 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 42.0 3.61e-01 77.5% 61.2%
3593073 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 41.0 3.20e-01 77.5% 70.8%
3387958 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.57 44.0 3.66e-01 86.3% 75.5%
3877094 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.56 42.0 2.81e-01 80.0% 69.4%
5791 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.56 41.0 3.67e-01 80.0% 59.7%
3507415 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 47.0 3.58e-01 93.8% 54.7%
4669469 10.1.1.94 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF25849 0.55 45.0 3.18e-01 88.7% 60.8%
3594123 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.84e-01 81.2% 85.9%
3597933 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 40.0 3.17e-01 78.8% 76.1%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.55 41.0 3.71e-01 80.0% 71.8%
4008035 223.1.1.112 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30417 0.55 40.0 2.82e-01 78.8% 98.9%
4123140 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.54 35.0 3.22e-01 70.0% 48.1%
4952060 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 37.0 4.11e-01 71.2% 95.0%
4329624 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.54 36.0 3.33e-01 71.2% 52.4%
3942485 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.53 42.0 3.73e-01 87.5% 71.7%
4311788 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.53 35.0 3.18e-01 72.5% 47.8%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.52 35.0 3.80e-01 71.2% 86.2%
5029736 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 40.0 3.46e-01 83.7% 56.0%
2834342 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.51 35.0 3.74e-01 71.2% 94.1%
3927196 5.1.4.155 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 0.51 41.0 2.73e-01 88.7% 76.2%
4399266 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.50 33.0 3.04e-01 70.0% 47.8%