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OP434449.1__UYL87170.1__SEA_OSCARSO_49__00049
Bact-VirOP434449.1__UYL87170.1__SEA_OSCARSO_49__00049
Identity
- Accession:
- OP434449 ↗
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Taxonomy
TaxID: 2985324
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-176
Domain cluster:
rep: MK170447__AZF89918.1__X__00084__D3-182
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09250.17 best | Prim-Pol | 83.5 | 3.30e-23 | 96.2% | 100.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.56 | 17.0 | 2.57e-01 | 88.5% | 57.7% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 19.0 | 2.68e-01 | 95.5% | 61.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3280020 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.82 | 78.0 | 7.48e-01 | 99.4% | 95.4% |
| 4960053 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.76 | 67.0 | 6.31e-01 | 92.4% | 100.0% |
| 7174 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.72 | 67.0 | 6.02e-01 | 100.0% | 96.7% |
| 3284431 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.68 | 63.0 | 5.00e-01 | 100.0% | 84.2% |
| 5026687 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.67 | 61.0 | 5.07e-01 | 100.0% | 93.8% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.65 | 59.0 | 5.38e-01 | 98.7% | 93.7% |
| 5046695 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 28.0 | 3.71e-01 | 79.0% | 97.5% |
| 4524601 | 304.117.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Sec_GG | 0.52 | 26.0 | 3.52e-01 | 77.7% | 97.3% |
| 5022263 | 322.1.1.2 ↗ | a+b two layers › HPr-like › HPr-like › HPr-like › 3H | 0.51 | 33.0 | 3.87e-01 | 82.2% | 92.7% |
| 3590472 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.51 | 26.0 | 3.50e-01 | 82.2% | 100.0% |
| 4981868 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 29.0 | 3.57e-01 | 87.3% | 94.4% |
D2
high
residues 197-282
Domain cluster:
rep: MZ209302.1__QXO13150.1__SEA_JOJO24_53__00053__D213-319
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.69 | 57.0 | 5.32e-01 | 91.9% | 100.0% |
| 2wzkA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.69 | 51.0 | 4.74e-01 | 79.1% | 87.3% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.69 | 49.0 | 4.68e-01 | 74.4% | 79.8% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.68 | 51.0 | 5.12e-01 | 80.2% | 89.8% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.67 | 59.0 | 4.85e-01 | 100.0% | 82.8% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.66 | 45.0 | 4.35e-01 | 70.9% | 74.0% |
| 3cqcB02 | 1.25.40.700 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 48.0 | 4.63e-01 | 79.1% | 69.8% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.65 | 49.0 | 4.02e-01 | 80.2% | 45.5% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 46.0 | 4.87e-01 | 74.4% | 93.3% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.63 | 49.0 | 4.99e-01 | 83.7% | 94.0% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 43.0 | 4.58e-01 | 72.1% | 88.9% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.59 | 46.0 | 4.12e-01 | 88.4% | 87.8% |
| 1m8pA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 50.0 | 3.98e-01 | 96.5% | 56.5% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.58 | 48.0 | 3.24e-01 | 95.3% | 53.5% |
| 3nkqA03 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.58 | 51.0 | 3.33e-01 | 100.0% | 52.1% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 41.0 | 3.57e-01 | 74.4% | 84.4% |
| 1xttB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 43.0 | 3.27e-01 | 80.2% | 99.5% |
| 2qbuA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.57 | 49.0 | 4.28e-01 | 95.3% | 92.4% |
| 1g2nA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.57 | 44.0 | 3.24e-01 | 84.9% | 85.4% |
| 1xb4B01 | 1.10.10.570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" | 0.57 | 44.0 | 4.16e-01 | 84.9% | 99.0% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 38.0 | 3.20e-01 | 76.7% | 92.5% |
| 3zrhA01 | 1.25.40.560 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 38.0 | 3.75e-01 | 82.6% | 84.4% |
| 2ccyA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.51 | 38.0 | 3.40e-01 | 81.4% | 83.5% |
| 4jykA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 38.0 | 3.27e-01 | 81.4% | 62.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610694 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 52.0 | 3.52e-01 | 77.9% | 26.4% |
| 3245018 | 109.4.1.543 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › efThoc1 | 0.68 | 55.0 | 4.12e-01 | 87.2% | 37.7% |
| 3263401 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.67 | 54.0 | 3.83e-01 | 90.7% | 98.6% |
| 3970612 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.66 | 51.0 | 4.35e-01 | 82.6% | 62.9% |
| 3894393 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.64 | 44.0 | 3.68e-01 | 70.9% | 57.3% |
| 3602354 | 1030.1.1.1 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A | 0.64 | 46.0 | 4.15e-01 | 75.6% | 96.7% |
| 3632024 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 47.0 | 4.07e-01 | 82.6% | 50.4% |
| 3935725 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.60 | 45.0 | 4.36e-01 | 81.4% | 78.9% |
| 3883914 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 43.0 | 4.07e-01 | 81.4% | 90.8% |
| 3930362 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.57 | 42.0 | 4.10e-01 | 80.2% | 74.0% |
| 3595484 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 46.0 | 3.67e-01 | 93.0% | 52.1% |
| 3794915 | 3065.1.1.1 ↗ | alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd | 0.52 | 45.0 | 3.85e-01 | 93.0% | 84.4% |
D3
high
residues 477-717
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tueD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.79 | 62.0 | 6.77e-01 | 91.7% | 96.0% |
| 1u0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 60.0 | 6.47e-01 | 96.3% | 97.1% |
| 3nbxX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 54.0 | 5.72e-01 | 89.2% | 96.7% |
| 3ja8204 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 60.0 | 5.28e-01 | 99.2% | 96.8% |
| 1g8pA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 44.0 | 4.81e-01 | 70.5% | 100.0% |
| 4r7zA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 56.0 | 5.14e-01 | 97.1% | 99.4% |
| 3f8tA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 56.0 | 5.24e-01 | 96.3% | 98.6% |
| 1a1vA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 29.0 | 3.64e-01 | 93.8% | 85.2% |
| 4lyaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 4.05e-01 | 83.0% | 89.6% |
| 2uvpA00 | 3.40.50.11670 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DNA replication regulator HobA | 0.52 | 35.0 | 3.95e-01 | 86.3% | 90.0% |
| 3g68A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 32.0 | 3.88e-01 | 80.5% | 98.6% |
| 1j5xA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 30.0 | 3.69e-01 | 80.9% | 90.7% |
| 4zpxA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 4.42e-01 | 92.9% | 93.1% |
| 1tjyA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 32.0 | 3.86e-01 | 93.4% | 98.7% |
| 3gohA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 25.0 | 3.46e-01 | 91.7% | 99.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954608 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.93 | 86.0 | 8.34e-01 | 99.6% | 87.3% |
| 4973289 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 85.0 | 8.16e-01 | 98.3% | 86.8% |
| 5081314 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.88 | 80.0 | 7.77e-01 | 100.0% | 86.9% |
| 5029777 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.88 | 80.0 | 7.82e-01 | 99.6% | 88.6% |
| 5035042 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.88 | 85.0 | 8.02e-01 | 99.6% | 88.0% |
| 5003620 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.87 | 77.0 | 6.79e-01 | 100.0% | 66.3% |
| 5022020 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.86 | 81.0 | 7.81e-01 | 99.6% | 88.7% |
| 4959586 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.85 | 82.0 | 7.77e-01 | 100.0% | 97.8% |
| 3945876 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.81 | 75.0 | 7.22e-01 | 99.6% | 86.8% |
| 3253892 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.80 | 64.0 | 7.06e-01 | 86.7% | 100.0% |
| 5011495 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.79 | 60.0 | 6.54e-01 | 100.0% | 93.0% |
| 2810781 | 8001.1.1.1 ↗ | alpha arrays › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › N-terminal domain of large tumor antigen › PPV_E1_C | 0.77 | 61.0 | 6.36e-01 | 90.0% | 88.7% |
| 4033843 | 2004.1.1.313 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom | 0.74 | 58.0 | 6.39e-01 | 88.0% | 99.5% |
| 5013281 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 63.0 | 5.98e-01 | 94.2% | 86.3% |
| 4314819 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.70 | 55.0 | 6.03e-01 | 90.9% | 100.0% |
| 5058121 | 2004.1.1.1224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF31144 | 0.69 | 64.0 | 5.96e-01 | 98.8% | 95.0% |
| 4443044 | 2004.1.1.1014 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27228 | 0.68 | 62.0 | 5.67e-01 | 97.5% | 100.0% |
| 4992064 | 2004.1.1.223 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › bpMoxR | 0.66 | 60.0 | 5.56e-01 | 96.3% | 95.9% |
| 3839744 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 56.0 | 5.44e-01 | 91.7% | 89.4% |
| 3981677 | 2004.1.1.22 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat | 0.63 | 46.0 | 4.63e-01 | 73.9% | 82.0% |
| 4318504 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.63 | 44.0 | 5.15e-01 | 72.6% | 100.0% |
| 3711143 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 57.0 | 4.84e-01 | 95.4% | 85.1% |
| 4944736 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 46.0 | 4.71e-01 | 74.3% | 90.0% |
| 3702069 | 2004.1.1.181 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 | 0.62 | 46.0 | 4.86e-01 | 74.3% | 85.9% |
| 3733456 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 48.0 | 4.58e-01 | 80.9% | 87.0% |
| 3290930 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.60 | 53.0 | 5.04e-01 | 93.4% | 93.6% |
| 3610966 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 49.0 | 4.65e-01 | 84.6% | 93.6% |
| 4945585 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 45.0 | 4.42e-01 | 77.6% | 92.2% |
| 4021019 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 39.0 | 3.87e-01 | 75.5% | 63.5% |
| 3730658 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 33.0 | 3.96e-01 | 76.8% | 98.7% |
D4
high
residues 725-812
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D765-843
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dp7P00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 62.0 | 6.67e-01 | 100.0% | 90.8% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 47.0 | 4.74e-01 | 97.7% | 68.6% |
| 2qbyA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 51.0 | 5.14e-01 | 97.7% | 74.4% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.34e-01 | 97.7% | 60.0% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 43.0 | 3.97e-01 | 98.9% | 52.7% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 39.0 | 3.73e-01 | 97.7% | 52.9% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 4.98e-01 | 100.0% | 83.5% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.88e-01 | 97.7% | 59.2% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 44.0 | 3.98e-01 | 97.7% | 58.3% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 43.0 | 3.23e-01 | 78.4% | 89.4% |
| 1fpqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 3.67e-01 | 97.7% | 51.9% |
| 3g3zA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 37.0 | 4.20e-01 | 97.7% | 92.2% |
| 7ovuA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 38.0 | 3.03e-01 | 75.0% | 52.3% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081315 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.88 | 66.0 | 7.14e-01 | 100.0% | 92.0% |
| 3883278 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.83 | 62.0 | 6.06e-01 | 100.0% | 72.6% |
| 5029778 | 101.1.2.43 ↗ | alpha arrays › HTH › HTH › winged helix domain › Pox_D5 | 0.82 | 64.0 | 6.41e-01 | 100.0% | 80.0% |
| 5022021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 65.0 | 5.86e-01 | 100.0% | 63.5% |
| 3729476 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.81 | 60.0 | 5.44e-01 | 100.0% | 59.1% |
| 3177239 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.79 | 59.0 | 5.04e-01 | 100.0% | 51.1% |
| 3636754 | 101.1.2.466 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C | 0.76 | 53.0 | 5.58e-01 | 97.7% | 78.8% |
| 4943354 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 52.0 | 5.44e-01 | 97.7% | 79.7% |
| 4980135 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 52.0 | 4.86e-01 | 97.7% | 60.2% |
| 3898745 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.73 | 57.0 | 5.56e-01 | 100.0% | 76.8% |
| 4976651 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 50.0 | 5.56e-01 | 97.7% | 90.0% |
| 4503351 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.71 | 52.0 | 4.91e-01 | 98.9% | 63.8% |
| 5011183 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.68 | 54.0 | 4.95e-01 | 97.7% | 66.4% |
| 4314672 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.68 | 51.0 | 4.81e-01 | 98.9% | 65.7% |
| 5052010 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 50.0 | 5.27e-01 | 98.9% | 86.3% |
| 4392375 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.67 | 52.0 | 4.85e-01 | 97.7% | 65.5% |
| 4373647 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.67 | 52.0 | 4.69e-01 | 97.7% | 60.0% |
| 4945942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 52.0 | 4.79e-01 | 97.7% | 64.5% |
| 5036311 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.67 | 54.0 | 5.16e-01 | 100.0% | 75.0% |
| 4109840 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.67 | 52.0 | 4.95e-01 | 97.7% | 72.0% |
| 4380725 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 42.0 | 4.52e-01 | 97.7% | 74.7% |
| 5073929 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.66 | 53.0 | 4.87e-01 | 100.0% | 67.3% |
| 4173782 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.66 | 54.0 | 4.91e-01 | 100.0% | 67.0% |
| 4983039 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.65 | 52.0 | 5.02e-01 | 100.0% | 75.8% |
| 4955909 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.65 | 54.0 | 5.03e-01 | 100.0% | 71.8% |
| 5026783 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.65 | 53.0 | 5.05e-01 | 100.0% | 76.0% |
| 4990676 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.65 | 54.0 | 5.00e-01 | 100.0% | 71.8% |
| 3875839 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.64 | 51.0 | 4.65e-01 | 98.9% | 64.3% |
| 4956520 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.64 | 53.0 | 4.89e-01 | 100.0% | 70.0% |
| 4545670 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.64 | 52.0 | 4.99e-01 | 98.9% | 75.8% |
| 5065786 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.64 | 52.0 | 4.66e-01 | 100.0% | 63.3% |
| 4961270 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.64 | 53.0 | 4.98e-01 | 100.0% | 74.3% |
| 4284507 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.64 | 53.0 | 5.00e-01 | 100.0% | 74.3% |
| 4975513 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.64 | 52.0 | 4.86e-01 | 100.0% | 70.9% |
| 3649376 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.63 | 50.0 | 4.14e-01 | 98.9% | 49.3% |
| 5005164 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.63 | 50.0 | 4.68e-01 | 98.9% | 69.4% |
| 4487383 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.63 | 53.0 | 4.92e-01 | 100.0% | 72.7% |
| 4672256 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.62 | 51.0 | 4.63e-01 | 98.9% | 67.0% |
| 5050129 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.62 | 53.0 | 4.90e-01 | 100.0% | 73.6% |
| 5049515 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.62 | 51.0 | 4.68e-01 | 98.9% | 67.8% |
| 3927517 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.62 | 50.0 | 4.77e-01 | 100.0% | 75.0% |
| 4478972 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.61 | 44.0 | 4.10e-01 | 97.7% | 60.0% |
| 4948099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 52.0 | 4.78e-01 | 100.0% | 72.7% |
| 4982781 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.61 | 52.0 | 4.79e-01 | 100.0% | 73.6% |
| 4944051 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 43.0 | 3.51e-01 | 97.7% | 38.8% |
| 5055466 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.60 | 54.0 | 4.91e-01 | 100.0% | 74.8% |
| 4599973 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 44.0 | 3.23e-01 | 77.3% | 89.6% |
| 4194060 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.60 | 44.0 | 3.23e-01 | 77.3% | 89.6% |
| 4934296 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 44.0 | 4.16e-01 | 98.9% | 65.7% |
| 5029327 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.59 | 53.0 | 4.80e-01 | 100.0% | 72.5% |
| 4966192 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.58 | 52.0 | 4.72e-01 | 100.0% | 73.0% |
| 4959927 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 41.0 | 3.35e-01 | 97.7% | 38.2% |
| 3479163 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 50.0 | 4.39e-01 | 98.9% | 63.8% |
| 4974161 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 53.0 | 4.67e-01 | 100.0% | 82.3% |
| 5044477 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 48.0 | 4.66e-01 | 98.9% | 81.0% |
| 5003874 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 53.0 | 4.72e-01 | 100.0% | 87.5% |
| 4961841 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 53.0 | 4.58e-01 | 100.0% | 82.3% |
| 5000349 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 52.0 | 4.68e-01 | 100.0% | 82.5% |
| 4967451 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.60e-01 | 98.9% | 77.1% |
| 4979490 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.57 | 52.0 | 4.67e-01 | 100.0% | 80.8% |
| 4203701 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.56 | 51.0 | 4.50e-01 | 100.0% | 74.4% |
| 4933997 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.56 | 52.0 | 4.62e-01 | 100.0% | 82.5% |
| 4061942 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.56 | 51.0 | 4.54e-01 | 100.0% | 83.2% |
| 5058268 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.56 | 45.0 | 4.13e-01 | 97.7% | 67.0% |
| 4962870 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.55 | 51.0 | 4.53e-01 | 100.0% | 80.5% |
| 5034797 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.54 | 46.0 | 3.49e-01 | 92.0% | 48.8% |
| 5056245 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.54 | 47.0 | 3.52e-01 | 92.0% | 52.5% |
| 5063007 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.54 | 46.0 | 3.65e-01 | 92.0% | 57.7% |
| 3592261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 46.0 | 3.99e-01 | 98.9% | 88.6% |
D5
medium
residues 339-476
Domain cluster:
rep: VV_D5-like_helicase__YP_009000916__Pithovirus_sibericum__1450746__D372-558
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08706.17 best | D5_N | 63.5 | 4.00e-17 | 94.2% | 79.6% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pypA00 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.54 | 37.0 | 2.64e-01 | 71.0% | 41.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954609 | 101.1.2.749 ↗ | alpha arrays › HTH › HTH › winged helix domain › D5_N | 0.78 | 53.0 | 6.34e-01 | 71.7% | 100.0% |
| 5034349 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.54 | 33.0 | 3.72e-01 | 93.5% | 78.8% |
| 4208178 | 3646.1.1.0 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters | 0.52 | 38.0 | 3.19e-01 | 76.1% | 76.7% |
| 3880737 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.52 | 36.0 | 3.31e-01 | 71.7% | 70.3% |
| 3231242 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 37.0 | 3.25e-01 | 71.7% | 80.5% |
| 3641553 | 5050.1.1.28 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › BT1 | 0.51 | 37.0 | 3.08e-01 | 73.9% | 78.3% |
| 4943622 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.51 | 45.0 | 4.50e-01 | 97.1% | 100.0% |