←Back to structures
OP455938.1__WAX23856.1__X__00009
Bact-VirOP455938.1__WAX23856.1__X__00009
Identity
- Accession:
- OP455938 ↗
- Kingdom:
- phage
Quality
77.7
mean pLDDT
Taxonomy
TaxID: 2995632
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-34
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09693.16 best | Phage_XkdX | 23.6 | 5.60e-05 | 97.1% | 62.5% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zttA00 | 6.10.140.720 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 76.0 | 5.82e-01 | 100.0% | 50.7% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.84 | 71.0 | 5.86e-01 | 97.1% | 90.3% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.82 | 69.0 | 4.79e-01 | 100.0% | 80.7% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.80 | 67.0 | 5.22e-01 | 100.0% | 89.7% |
| 3gbhB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.79 | 63.0 | 3.91e-01 | 97.1% | 38.0% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.79 | 61.0 | 4.06e-01 | 91.2% | 27.1% |
| 3bemB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.79 | 67.0 | 4.11e-01 | 100.0% | 37.8% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.78 | 67.0 | 5.14e-01 | 100.0% | 70.9% |
| 2wnsA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.77 | 63.0 | 3.89e-01 | 94.1% | 39.1% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.77 | 61.0 | 3.95e-01 | 100.0% | 18.7% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.68 | 51.0 | 3.77e-01 | 82.4% | 29.2% |
| 3kv1A00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 52.0 | 3.18e-01 | 91.2% | 31.2% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.68 | 51.0 | 3.45e-01 | 88.2% | 42.8% |
| 4mqvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.61e-01 | 100.0% | 76.9% |
| 2aamC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 49.0 | 2.98e-01 | 94.1% | 20.6% |
| 2rcnA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.66 | 53.0 | 4.53e-01 | 100.0% | 95.2% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 51.0 | 3.97e-01 | 94.1% | 50.0% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.23e-01 | 97.1% | 64.4% |
| 1akhB00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 51.0 | 4.04e-01 | 94.1% | 60.3% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.65 | 54.0 | 3.36e-01 | 97.1% | 40.6% |
| 2g25A03 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 46.0 | 3.12e-01 | 94.1% | 78.2% |
| 2k89A00 | 3.10.20.870 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain | 0.64 | 50.0 | 4.07e-01 | 100.0% | 66.3% |
| 1x2mA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 48.0 | 4.29e-01 | 91.2% | 83.3% |
| 3wtcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 49.0 | 2.90e-01 | 88.2% | 27.8% |
| 1dw9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 43.0 | 3.44e-01 | 85.3% | 32.2% |
| 2ld5A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 44.0 | 3.77e-01 | 94.1% | 74.6% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 44.0 | 4.01e-01 | 82.4% | 57.4% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 42.0 | 3.94e-01 | 88.2% | 91.5% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 44.0 | 3.81e-01 | 100.0% | 91.0% |
| 3kxyT00 | 6.20.290.10 | Special › Other non-globular › Dna Ligase; domain 1 › | 0.56 | 39.0 | 3.45e-01 | 88.2% | 46.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5031714 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.92 | 84.0 | 5.77e-01 | 100.0% | 53.8% |
| 4992850 | 6119.1.1.0 ↗ | alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB | 0.91 | 75.0 | 6.31e-01 | 91.2% | 56.4% |
| 3440587 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.84 | 72.0 | 4.54e-01 | 97.1% | 27.1% |
| 4946053 | 4237.1.1.0 ↗ | beta barrels › FomD-like › FomD-like › FomD-like | 0.84 | 70.0 | 4.57e-01 | 100.0% | 41.3% |
| 5050319 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.83 | 70.0 | 4.49e-01 | 100.0% | 83.0% |
| 3499467 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.81 | 64.0 | 3.80e-01 | 97.1% | 11.8% |
| 5002758 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.79 | 67.0 | 5.61e-01 | 97.1% | 80.0% |
| 3208982 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 56.0 | 5.18e-01 | 88.2% | 88.9% |
| 3211847 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.70 | 54.0 | 5.12e-01 | 97.1% | 73.3% |
| 4983993 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.69 | 57.0 | 4.87e-01 | 100.0% | 86.7% |
| 5013516 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 57.0 | 4.20e-01 | 100.0% | 54.7% |
| 3538312 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.66 | 50.0 | 4.59e-01 | 91.2% | 88.0% |
| 3215991 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 52.0 | 4.31e-01 | 94.1% | 76.9% |
| 4319187 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.65 | 51.0 | 3.93e-01 | 94.1% | 55.3% |
| 4258058 | 102.1.1.38 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RlmN_N | 0.65 | 51.0 | 4.24e-01 | 91.2% | 53.8% |
| 3478184 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.64 | 50.0 | 3.68e-01 | 94.1% | 44.0% |
| 3768463 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 50.0 | 4.29e-01 | 94.1% | 76.7% |
| 3274484 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.63 | 49.0 | 3.94e-01 | 94.1% | 58.7% |
| 3495504 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 47.0 | 4.35e-01 | 91.2% | 88.0% |
| 3889817 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.63 | 48.0 | 3.82e-01 | 94.1% | 55.0% |
| 3485420 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 50.0 | 4.32e-01 | 100.0% | 80.0% |
| 4147532 | 102.1.1.100 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 | 0.62 | 47.0 | 3.90e-01 | 82.4% | 41.5% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.62 | 50.0 | 3.72e-01 | 100.0% | 63.8% |
| 3217489 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.61 | 45.0 | 4.16e-01 | 88.2% | 84.0% |
| 3218285 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.61 | 45.0 | 3.49e-01 | 94.1% | 49.5% |
| 3760172 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 44.0 | 3.59e-01 | 94.1% | 57.5% |
| 3560402 | 101.1.1.36 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN | 0.59 | 44.0 | 3.87e-01 | 97.1% | 75.4% |
| 3525151 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 46.0 | 4.22e-01 | 94.1% | 84.4% |