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OP455938.1WAX23884.1X__00037

Bact-Vir

OP455938.1__WAX23884.1__X__00037

Identity

Accession:: OP455938 ↗
Kingdom:: phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Latilactobacillus_phage_TMW_1.1397_P1

TaxID: 2995632

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-80

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7s03A01	1.10.10.1450	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.66	42.0	4.97e-01	87.0%	100.0%
1fkaD01	1.10.1050.10	Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › Ribosomal protein S4/S9, N-terminal domain	0.63	42.0	4.50e-01	70.1%	95.5%
1ezfC00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.63	53.0	3.56e-01	97.4%	75.6%
2oifB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	44.0	3.53e-01	81.8%	94.0%
1j6wA00	3.30.1360.80	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS)	0.57	44.0	3.58e-01	88.3%	70.8%
3lpxA03	1.10.268.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3	0.52	44.0	4.09e-01	96.1%	80.6%
2oyqD05	1.20.1280.300	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.52	44.0	4.12e-01	94.8%	83.3%
3b85A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	36.0	2.84e-01	76.6%	80.2%
3ztaA00	1.10.490.130	Mainly Alpha › Orthogonal Bundle › Globin-like ›	0.51	41.0	3.43e-01	96.1%	49.6%
6hxlB01	1.10.230.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2	0.51	43.0	3.73e-01	93.5%	99.2%
3efoB01	1.20.120.730	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sec23/Sec24 helical domain	0.51	41.0	3.41e-01	93.5%	67.5%
1v9dA01	1.20.58.630	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	40.0	3.93e-01	90.9%	84.9%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4944622	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.62	54.0	5.07e-01	97.4%	88.4%
4271344	101.1.1.305 ↗	alpha arrays › HTH › HTH › Three-helical HTH › ALS2CR8	0.59	47.0	4.89e-01	94.8%	94.3%
3786301	101.1.1.20 ↗	alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A	0.59	45.0	4.26e-01	83.1%	95.8%
4614874	4203.1.1.1 ↗	few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33	0.57	37.0	4.13e-01	81.8%	92.7%
5022238	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	44.0	4.48e-01	92.2%	92.0%
3609322	101.1.4.46 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CLAMP	0.55	48.0	3.86e-01	97.4%	64.0%
3546037	5067.1.1.19 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › CLAMP	0.55	47.0	3.79e-01	96.1%	52.7%
3708461	545.1.1.2 ↗	alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27 › CLAMP	0.55	47.0	3.88e-01	97.4%	66.2%
4029259	3273.1.1.4 ↗	alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › CLAMP	0.54	45.0	4.03e-01	94.8%	72.2%
4420923	327.10.1.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N	0.51	37.0	3.77e-01	94.8%	80.0%
4860	626.1.1.1 ↗	alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2	0.51	40.0	3.46e-01	90.9%	55.3%
3755136	545.1.1.2 ↗	alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27 › CLAMP	0.50	41.0	3.51e-01	94.8%	62.1%
3840045	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.50	35.0	3.55e-01	75.3%	92.5%

D2 high residues 83-149

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5ao6A01	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.75	53.0	4.69e-01	82.1%	51.6%
4usoA00	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.72	64.0	5.10e-01	100.0%	95.6%
3tqtA03	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.53	34.0	3.44e-01	100.0%	63.2%
7febA03	3.40.50.12790	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4	0.52	37.0	3.43e-01	77.6%	88.0%
5ja1B00	3.90.820.10	Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	0.50	35.0	3.56e-01	89.6%	74.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5039116	802.1.1.0 ↗	a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160	0.57	29.0	3.45e-01	79.1%	73.3%
3969151	304.14.1.1 ↗	a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR	0.54	46.0	4.44e-01	100.0%	93.8%
3790328	2003.1.5.13 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth	0.53	45.0	3.00e-01	97.0%	59.0%
4247992	304.14.1.1 ↗	a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR	0.52	44.0	4.12e-01	100.0%	89.4%