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OP455938.1__WAX23889.1__X__00042

Bact-Vir

OP455938.1__WAX23889.1__X__00042

Identity

Accession:
OP455938 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.62 44.0 4.35e-01 100.0% 71.4%
2ix5A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.60 36.0 2.98e-01 100.0% 33.6%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 40.0 3.21e-01 98.6% 33.8%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.58 40.0 3.93e-01 98.6% 64.6%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 39.0 3.82e-01 70.3% 95.2%
1o0sA03 3.40.50.10380 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain 0.58 42.0 3.06e-01 78.4% 87.8%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 40.0 3.21e-01 71.6% 52.7%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.57 42.0 2.78e-01 78.4% 30.3%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.57 50.0 3.28e-01 100.0% 82.5%
1f6fA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 45.0 3.41e-01 87.8% 85.2%
3rmgA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.54 45.0 3.11e-01 97.3% 42.8%
3l8kA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.15e-01 89.2% 40.6%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 43.0 3.37e-01 86.5% 48.4%
3cdlB02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 44.0 3.70e-01 93.2% 95.5%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 39.0 3.24e-01 79.7% 86.1%
1uajA02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.53 34.0 3.42e-01 73.0% 65.8%
8eefB01 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.53 43.0 3.72e-01 94.6% 100.0%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 45.0 3.55e-01 97.3% 87.0%
6me6B02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 43.0 3.01e-01 100.0% 77.9%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.31e-01 89.2% 55.4%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.51 40.0 3.46e-01 87.8% 95.2%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 32.0 3.31e-01 75.7% 67.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3165359 105.1.1.0 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.80 58.0 5.16e-01 97.3% 56.0%
4993098 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.71 55.0 5.03e-01 85.1% 100.0%
4983621 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.65 50.0 4.28e-01 82.4% 95.8%
3557223 150.3.1.22 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › PRF 0.62 50.0 3.75e-01 87.8% 82.8%
3215426 192.29.1.172 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29678 0.61 47.0 4.03e-01 86.5% 86.9%
3169408 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.60 42.0 4.30e-01 97.3% 75.7%
4479551 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.60 48.0 4.49e-01 98.6% 71.1%
5067584 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 39.0 4.05e-01 100.0% 71.4%
3174080 6169.1.1.0 extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 0.59 41.0 3.87e-01 86.5% 60.0%
3252296 601.55.1.1 alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 › NCA2 0.57 39.0 3.66e-01 71.6% 55.8%
5075987 150.1.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin 0.57 38.0 2.94e-01 100.0% 33.3%
3914266 150.3.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.57 46.0 3.56e-01 87.8% 84.4%
3625471 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 49.0 3.23e-01 100.0% 45.6%
3918791 150.3.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.55 43.0 3.45e-01 87.8% 96.1%
4030141 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.54 40.0 3.53e-01 83.8% 52.7%
4939150 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 40.0 4.06e-01 95.9% 80.0%
4014279 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 44.0 3.51e-01 100.0% 79.4%
4303963 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.51 39.0 3.96e-01 100.0% 81.3%
4997276 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 45.0 3.45e-01 100.0% 53.4%
D2 high residues 86-132
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.92 83.0 6.12e-01 100.0% 41.1%
2lqxA00 6.10.250.1700 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.88 64.0 6.75e-01 87.2% 87.8%
4fvmA07 1.20.1280.310 Mainly Alpha › Up-down Bundle › Monooxygenase › B family DNA polymerase, thumb domain, four helix bundle 0.86 63.0 5.66e-01 78.7% 56.9%
6lumD01 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.86 77.0 5.56e-01 100.0% 37.6%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.86 76.0 5.66e-01 97.9% 59.5%
1zoyD00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.84 75.0 5.77e-01 100.0% 46.1%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.84 65.0 5.80e-01 85.1% 59.7%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.83 69.0 5.36e-01 100.0% 42.5%
1tmxB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.82 67.0 4.03e-01 95.7% 14.6%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.82 72.0 5.01e-01 100.0% 32.7%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.81 70.0 4.90e-01 95.7% 31.7%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 67.0 5.79e-01 100.0% 60.0%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.78 59.0 3.71e-01 91.5% 15.9%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.76 61.0 4.06e-01 97.9% 21.8%
3layF00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.76 56.0 4.77e-01 80.9% 98.7%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.75 62.0 4.81e-01 100.0% 40.5%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 58.0 5.45e-01 89.4% 75.4%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.72 50.0 3.28e-01 78.7% 16.2%
3j27B00 1.10.8.970 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Flavivirus envelope glycoprotein M-like 0.70 49.0 4.37e-01 80.9% 50.0%
4abyD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 55.0 3.38e-01 97.9% 14.5%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.67 56.0 4.88e-01 100.0% 62.3%
2l35A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.65 52.0 4.88e-01 100.0% 73.0%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.63 49.0 4.26e-01 91.5% 56.2%
1fp1D02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 51.0 3.29e-01 95.7% 51.5%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 48.0 4.26e-01 100.0% 64.2%
1rajA01 4.10.880.10 Few Secondary Structures › Irregular › Poliovirus 3D polymerase; domain 1 (Nucleotidyltransferase) › Poliovirus 3D polymerase Domain 1 (Nucleotidyltransferase) 0.60 40.0 4.19e-01 70.2% 86.4%
3rqtA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.56 46.0 3.10e-01 100.0% 88.3%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 46.0 4.31e-01 97.9% 75.8%
1rqgA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.54 42.0 3.03e-01 89.4% 70.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484700 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.93 70.0 5.27e-01 78.7% 38.0%
4002640 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.89 63.0 3.63e-01 74.5% 9.7%
4467403 4990.1.1.1 alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap 0.89 80.0 4.75e-01 95.7% 16.4%
3936633 2004.1.1.33 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind 0.87 79.0 4.78e-01 100.0% 68.3%
2630625 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.86 77.0 5.33e-01 100.0% 32.2%
3988174 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.86 75.0 6.13e-01 100.0% 54.1%
4177809 4990.1.1.1 alpha arrays › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase chaperone LifO-like › Lipase_chap 0.86 81.0 4.83e-01 100.0% 17.8%
2625677 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.86 76.0 5.66e-01 97.9% 59.5%
3365690 109.4.1.927 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN 0.85 68.0 4.20e-01 87.2% 17.5%
5063587 611.9.1.0 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.84 74.0 6.03e-01 97.9% 54.1%
4348932 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.84 71.0 5.30e-01 100.0% 38.3%
5017842 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.83 73.0 6.02e-01 100.0% 63.5%
3250617 140.1.1.4 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.83 71.0 4.49e-01 97.9% 19.6%
3184585 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.82 69.0 6.11e-01 100.0% 65.7%
4512804 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.82 59.0 6.28e-01 80.9% 92.5%
3168993 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.81 68.0 5.78e-01 100.0% 57.5%
3797030 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.79 66.0 4.28e-01 97.9% 20.9%
3744818 101.1.1.213 alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H 0.78 66.0 5.67e-01 95.7% 69.3%
5012687 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.75 62.0 4.97e-01 100.0% 46.3%
3215346 397.7.1.0 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.72 59.0 5.81e-01 95.7% 90.0%
3948115 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.71 59.0 3.39e-01 100.0% 8.8%
3449084 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.71 58.0 4.68e-01 100.0% 58.1%
4463205 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.70 54.0 3.14e-01 100.0% 9.0%
2570270 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.70 57.0 5.59e-01 93.6% 86.5%
4594465 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.67 53.0 4.26e-01 89.4% 55.8%
3967290 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 54.0 4.90e-01 100.0% 74.3%
3242821 192.10.1.0 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.66 53.0 5.07e-01 100.0% 81.7%
3600361 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.66 55.0 4.49e-01 100.0% 64.2%
3416802 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 54.0 4.79e-01 97.9% 62.9%
3563618 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.65 54.0 4.27e-01 97.9% 54.5%
4980072 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 54.0 3.85e-01 100.0% 29.7%
3534511 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.64 53.0 3.82e-01 100.0% 29.4%
4034201 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.63 52.0 4.84e-01 95.7% 75.0%
5050337 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 44.0 3.99e-01 78.7% 55.9%
3915514 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.61 51.0 3.89e-01 100.0% 37.6%