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OP455940.1__WAX24001.1__X__00036

Bact-Vir

OP455940.1__WAX24001.1__X__00036

Identity

Accession:
OP455940 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-39
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.78 64.0 4.39e-01 97.1% 27.4%
1ya5T01 2.20.160.10 Mainly Beta › Single Sheet › titin filament fold › titin domain like 0.72 60.0 4.60e-01 100.0% 76.2%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.69 53.0 3.04e-01 100.0% 8.4%
6w0pB01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.68 57.0 3.34e-01 100.0% 38.1%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 54.0 3.61e-01 100.0% 43.9%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.67 46.0 3.29e-01 73.5% 75.5%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.65 53.0 3.41e-01 100.0% 20.2%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 51.0 3.00e-01 100.0% 10.9%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 47.0 3.55e-01 88.2% 53.6%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 49.0 3.57e-01 94.1% 54.3%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.62 50.0 3.62e-01 100.0% 32.7%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.61 47.0 3.24e-01 100.0% 22.7%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.61 49.0 3.13e-01 100.0% 21.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 3.76e-01 100.0% 45.9%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 2.92e-01 100.0% 14.4%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 47.0 3.16e-01 100.0% 21.7%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 3.33e-01 100.0% 31.5%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.19e-01 100.0% 46.4%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 46.0 3.18e-01 100.0% 25.3%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 3.29e-01 97.1% 61.1%
6grsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.12e-01 82.4% 51.6%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 47.0 3.38e-01 100.0% 32.1%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.56 42.0 3.33e-01 100.0% 33.7%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 38.0 2.34e-01 100.0% 9.0%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 2.82e-01 79.4% 22.1%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.55 41.0 3.39e-01 97.1% 42.3%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.55 44.0 3.19e-01 100.0% 34.2%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 2.98e-01 100.0% 23.5%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 42.0 3.12e-01 100.0% 29.6%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 2.92e-01 94.1% 66.1%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 41.0 2.68e-01 97.1% 17.0%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 41.0 2.82e-01 100.0% 39.1%
3dorA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 41.0 2.59e-01 100.0% 22.4%
2f4lA02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 40.0 3.91e-01 100.0% 83.7%
8deeJ01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.35e-01 100.0% 66.7%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 37.0 3.16e-01 70.6% 36.9%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 2.90e-01 82.4% 69.3%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 41.0 2.82e-01 100.0% 29.3%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 38.0 2.84e-01 100.0% 31.1%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 2.69e-01 91.2% 22.6%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 2.83e-01 88.2% 70.3%
7kggC01 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.52 38.0 3.03e-01 88.2% 39.3%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.51 36.0 3.16e-01 100.0% 45.1%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 2.47e-01 76.5% 16.7%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 35.0 3.49e-01 79.4% 61.5%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 2.79e-01 88.2% 63.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391411 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 72.0 6.86e-01 100.0% 85.0%
3824181 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.78 66.0 5.56e-01 100.0% 60.0%
3176281 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.76 62.0 4.82e-01 100.0% 42.7%
3622714 5.1.5.113 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR19_1st 0.75 60.0 3.47e-01 100.0% 9.4%
3319564 219.1.1.113 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 0.74 50.0 3.22e-01 70.6% 15.0%
3370941 295.1.1.35 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 0.74 57.0 3.77e-01 100.0% 19.4%
3607857 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.74 58.0 4.27e-01 100.0% 32.0%
3410286 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.72 61.0 4.47e-01 100.0% 43.2%
3743318 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.71 54.0 3.40e-01 100.0% 14.8%
3497893 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 4.16e-01 100.0% 33.7%
3956463 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.70 56.0 3.44e-01 100.0% 80.0%
5050199 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 54.0 3.60e-01 100.0% 20.3%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.69 57.0 3.98e-01 100.0% 31.2%
4330094 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.68 53.0 4.13e-01 100.0% 40.0%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.67 52.0 3.09e-01 100.0% 10.3%
3452042 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.66 55.0 4.84e-01 100.0% 69.1%
3455988 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 53.0 3.63e-01 100.0% 24.8%
3315597 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.66 51.0 4.15e-01 100.0% 45.6%
4013174 243.1.1.83 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26061 0.65 53.0 3.42e-01 100.0% 18.9%
3455742 284.2.1.2 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › DUF8223 0.65 48.0 4.02e-01 88.2% 44.6%
3931594 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 51.0 3.99e-01 100.0% 38.9%
3820157 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.65 49.0 3.06e-01 100.0% 15.7%
3937984 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 50.0 3.80e-01 100.0% 40.0%
None 0.63 53.0 3.11e-01 100.0% 11.3%
3903931 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.62 52.0 3.04e-01 100.0% 10.7%
1245468 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.62 44.0 4.27e-01 82.4% 66.7%
3458525 5.1.5.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF295 0.62 48.0 2.92e-01 100.0% 12.9%
3507295 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.62 48.0 3.69e-01 100.0% 36.0%
3412138 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 48.0 3.26e-01 100.0% 28.7%
5029082 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 48.0 3.19e-01 97.1% 21.8%
3986836 375.1.1.253 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.60 48.0 4.29e-01 100.0% 70.9%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.59 43.0 3.33e-01 100.0% 31.5%
3593809 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.59 45.0 3.38e-01 100.0% 42.7%
3263949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.14e-01 79.4% 31.6%
4021913 109.3.1.1 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.58 46.0 2.56e-01 100.0% 7.5%
5022705 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 44.0 3.44e-01 100.0% 64.2%
3458138 375.1.1.131 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF702 0.57 44.0 3.82e-01 100.0% 52.3%
5005105 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 43.0 3.35e-01 91.2% 34.4%
3494073 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.57 39.0 2.17e-01 73.5% 4.3%
None 0.57 47.0 2.72e-01 100.0% 15.7%
1153578 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.56 43.0 3.56e-01 88.2% 44.3%
5044346 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 46.0 3.34e-01 100.0% 30.9%
None 0.56 46.0 2.66e-01 100.0% 15.4%
3475612 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.56 39.0 2.64e-01 82.4% 16.2%
3253615 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.18e-01 100.0% 31.3%
3962549 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 41.0 2.88e-01 100.0% 23.3%
3215556 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 42.0 4.22e-01 97.1% 100.0%
3958652 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 42.0 2.83e-01 100.0% 18.9%
3942790 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.53 43.0 3.62e-01 100.0% 55.4%
4547017 109.3.1.99 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2+Ank_5 0.53 38.0 2.45e-01 100.0% 13.5%
3728856 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.53 36.0 2.28e-01 70.6% 49.3%
5030377 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 41.0 2.93e-01 100.0% 26.2%
3447043 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 41.0 4.15e-01 100.0% 91.4%
4966827 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 41.0 2.97e-01 100.0% 31.7%
3080535 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.51 36.0 2.84e-01 88.2% 38.8%
4995179 236.3.1.1 beta barrels › GroES-like › AF1531-like › AF1531-like › DUF655 0.51 39.0 3.22e-01 100.0% 42.4%
4944647 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 38.0 3.60e-01 100.0% 66.7%
3937230 221.1.1.12 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD 0.50 40.0 3.17e-01 97.1% 46.3%