Back to structures

OP455940.1__WAX24008.1__X__00043

Bact-Vir

OP455940.1__WAX24008.1__X__00043

Identity

Accession:
OP455940 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-126
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.76 67.0 5.85e-01 100.0% 66.1%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.72 50.0 4.72e-01 76.6% 60.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.72 58.0 5.03e-01 100.0% 57.3%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 58.0 5.38e-01 100.0% 74.5%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 54.0 4.97e-01 100.0% 66.3%
1ywxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 55.0 5.23e-01 100.0% 76.1%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.65 57.0 4.34e-01 96.1% 43.4%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 43.0 4.31e-01 75.3% 66.7%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 59.0 4.51e-01 100.0% 64.0%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 53.0 4.79e-01 100.0% 67.6%
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 51.0 5.05e-01 100.0% 84.1%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 44.0 4.10e-01 76.6% 57.7%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 56.0 4.61e-01 100.0% 76.6%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.62 52.0 4.49e-01 93.5% 97.6%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 56.0 5.03e-01 100.0% 75.2%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 3.96e-01 74.0% 57.0%
1x31A02 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 51.0 3.24e-01 92.2% 27.6%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.07e-01 76.6% 60.2%
3rghA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 4.21e-01 100.0% 63.5%
4hl9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 3.99e-01 74.0% 60.6%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 4.63e-01 100.0% 77.9%
1el6A03 3.90.1160.10 Alpha Beta › Alpha-Beta Complex › Baseplate Structural Protein Gp11; Chain: A, domain 3 › Baseplate structural protein gp11, finger domain 0.59 42.0 3.77e-01 75.3% 77.1%
2x7fC01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 49.0 4.63e-01 97.4% 75.5%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 51.0 3.87e-01 100.0% 53.8%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 48.0 3.14e-01 92.2% 27.1%
1v05A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 4.00e-01 100.0% 63.5%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.57 50.0 4.58e-01 100.0% 74.0%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 50.0 4.28e-01 100.0% 62.4%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 50.0 4.42e-01 100.0% 74.3%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 49.0 4.68e-01 100.0% 88.0%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 49.0 3.22e-01 100.0% 92.3%
4lfhD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.79e-01 100.0% 67.1%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.85e-01 100.0% 73.1%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.55 49.0 4.40e-01 100.0% 74.3%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 4.42e-01 100.0% 90.4%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.43e-01 72.7% 66.1%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.07e-01 100.0% 69.2%
1ll8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 3.79e-01 88.3% 97.4%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.54 47.0 3.91e-01 100.0% 87.1%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.67e-01 92.2% 81.9%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 4.36e-01 98.7% 98.9%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.00e-01 100.0% 72.8%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 40.0 2.90e-01 87.0% 65.8%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 46.0 4.01e-01 100.0% 66.4%
4wojA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 45.0 3.33e-01 100.0% 90.6%
3fpfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.00e-01 93.5% 57.6%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 43.0 3.45e-01 93.5% 68.8%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 43.0 3.10e-01 97.4% 53.1%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.27e-01 85.7% 99.3%
2mouA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.12e-01 96.1% 68.2%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.50 42.0 3.14e-01 97.4% 57.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590201 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.96 88.0 7.68e-01 100.0% 68.5%
4032900 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.95 91.0 7.95e-01 98.7% 72.4%
3720023 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.79 64.0 5.84e-01 100.0% 67.0%
119252 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.76 67.0 5.85e-01 100.0% 66.1%
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.76 66.0 5.84e-01 98.7% 67.6%
3974181 1.1.5.88 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 0.75 57.0 5.46e-01 100.0% 70.0%
3968971 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.74 60.0 5.73e-01 100.0% 75.6%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.73 59.0 5.23e-01 100.0% 60.9%
5049368 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.73 60.0 4.83e-01 100.0% 46.0%
5036802 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.73 56.0 4.56e-01 98.7% 45.0%
4260084 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 59.0 5.05e-01 100.0% 55.8%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.72 62.0 5.27e-01 100.0% 59.2%
3974369 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 56.0 5.44e-01 100.0% 75.3%
160389 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.72 59.0 4.98e-01 100.0% 55.3%
3943170 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.71 61.0 5.75e-01 100.0% 78.9%
3965594 1.1.13.53 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 0.71 60.0 5.59e-01 100.0% 73.7%
4682340 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.71 52.0 4.41e-01 77.9% 97.6%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 56.0 6.00e-01 97.4% 100.0%
4943219 205.1.1.123 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer2_BFD 0.70 58.0 4.58e-01 100.0% 44.5%
5034906 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.70 54.0 4.30e-01 100.0% 41.8%
3343879 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 51.0 4.29e-01 77.9% 59.2%
3986531 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.69 48.0 3.94e-01 81.8% 40.0%
5013322 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 50.0 5.20e-01 77.9% 84.3%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 56.0 5.24e-01 100.0% 71.6%
3795831 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 54.0 5.68e-01 100.0% 97.1%
4031285 1.1.13.64 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal 0.67 59.0 5.62e-01 100.0% 82.2%
3516283 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.67 54.0 5.67e-01 96.1% 98.6%
3384464 304.127.1.0 a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain 0.67 51.0 4.27e-01 81.8% 60.0%
4656128 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.67 61.0 4.52e-01 100.0% 64.2%
3842059 11.1.1.927 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29951 0.67 51.0 4.37e-01 83.1% 69.6%
3970830 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 54.0 4.96e-01 100.0% 68.0%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.65 57.0 5.39e-01 100.0% 81.1%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 56.0 5.08e-01 100.0% 69.5%
5022659 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 44.0 4.45e-01 79.2% 70.7%
4929611 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 45.0 4.36e-01 75.3% 64.7%
5064178 1.1.13.73 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PUA 0.65 47.0 5.18e-01 92.2% 100.0%
3248167 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.65 46.0 4.35e-01 90.9% 63.3%
3587055 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.64 46.0 4.42e-01 76.6% 97.8%
3501491 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 56.0 4.70e-01 100.0% 57.8%
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 54.0 4.88e-01 98.7% 96.2%
5019700 5090.1.1.6 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.61 44.0 4.04e-01 76.6% 87.0%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.60 54.0 4.87e-01 100.0% 96.2%
3393350 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 54.0 3.95e-01 100.0% 37.6%
4197562 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.60 40.0 2.81e-01 84.4% 21.6%
5056674 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.56e-01 100.0% 68.6%
3261290 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.59 51.0 4.36e-01 100.0% 59.2%
3500523 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 50.0 3.53e-01 100.0% 27.7%
3246527 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 43.0 2.82e-01 77.9% 37.0%
3634800 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 42.0 3.82e-01 76.6% 84.8%
3435075 1.1.9.4 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.58 51.0 3.73e-01 100.0% 49.3%
3517450 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 51.0 2.92e-01 100.0% 9.5%
3953748 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.58 49.0 3.66e-01 93.5% 84.1%
4176978 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.57 51.0 3.62e-01 100.0% 34.6%
3247872 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.57 50.0 4.24e-01 100.0% 59.2%
4026033 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.57 52.0 4.59e-01 100.0% 80.9%
4950602 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.37e-01 100.0% 67.3%
3996863 2003.1.5.119 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_22 0.56 47.0 3.43e-01 90.9% 78.8%
4929587 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 48.0 4.63e-01 100.0% 86.7%
3220264 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.56 47.0 3.25e-01 90.9% 70.0%
3838529 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.54 42.0 2.99e-01 100.0% 26.9%
3602033 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 2.84e-01 94.8% 32.6%
1219773 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.53 42.0 3.92e-01 100.0% 69.1%
3743321 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 45.0 3.05e-01 97.4% 46.8%
4039355 2004.1.1.258 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2 0.51 35.0 2.41e-01 74.0% 90.9%
3612375 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.51 44.0 3.12e-01 98.7% 34.4%
4042102 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.50 40.0 2.98e-01 94.8% 57.1%