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OP481051.1__UYE90221.1__A5gp_00023__00023

Bact-Vir

OP481051.1__UYE90221.1__A5gp_00023__00023

Identity

Accession:
OP481051 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Alteromonas_phage_vB_AemP_PT15-A5

TaxID: 2981567

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-154_209-217
PDB
Domain cluster: rep: OK632026.1__UFK27510.1__X__00028__D137-262_297-308
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7mh2A01 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.67 41.0 5.07e-01 97.3% 97.8%
3ec7A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 30.0 3.30e-01 100.0% 59.8%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 25.0 3.37e-01 97.3% 82.5%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 25.0 3.33e-01 98.0% 82.5%
4m00A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 3.50e-01 98.0% 87.2%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.58e-01 98.7% 94.0%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 24.0 2.99e-01 92.7% 70.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890673 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.64 60.0 4.49e-01 100.0% 47.9%
4931005 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 22.0 3.48e-01 89.3% 81.8%
4400697 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.59 20.0 2.86e-01 86.0% 60.0%
4968862 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 21.0 3.36e-01 88.0% 97.8%
4031028 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.56 47.0 3.75e-01 92.7% 47.1%
5083079 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.56 51.0 3.86e-01 98.0% 44.3%
3255783 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.55 19.0 2.69e-01 79.3% 62.9%
4196765 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 24.0 3.36e-01 92.0% 85.7%
4227886 11.1.1.246 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.52 25.0 3.31e-01 98.0% 83.7%
3946670 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.52 48.0 3.90e-01 100.0% 55.6%
5083777 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.52 45.0 3.51e-01 98.7% 45.7%
5062264 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.51 27.0 3.37e-01 98.0% 83.3%
D2 high residues 158-206
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dgwX00 2.60.120.1450 Mainly Beta › Sandwich › Jelly Rolls › 0.57 36.0 3.19e-01 93.9% 40.8%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.54 40.0 2.99e-01 85.7% 84.0%
2freA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 40.0 2.78e-01 89.8% 30.2%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 2.97e-01 98.0% 98.2%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 40.0 2.56e-01 91.8% 60.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3403757 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.54 40.0 2.41e-01 85.7% 39.7%
3336981 7583.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › ARMT1-like_dom 0.53 39.0 2.77e-01 81.6% 72.4%
3971438 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 35.0 2.39e-01 100.0% 16.8%
4844112 1058.1.1.1 ↗ extended segments › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › PF31254 0.52 34.0 3.09e-01 73.5% 43.6%
4891097 1058.1.1.1 ↗ extended segments › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › Herpes DNA polymerase N-terminal domain › PF31254 0.52 34.0 3.33e-01 73.5% 56.7%
3729331 304.112.1.3 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN 0.51 35.0 2.96e-01 75.5% 38.9%