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OP484857.1__UYE95809.1__HAAEEKHM_00089__00089

Bact-Vir

OP484857.1__UYE95809.1__HAAEEKHM_00089__00089

Identity

Accession:
OP484857 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-89
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11523.14 best DUF3223 62.2 7.90e-17 88.9% 98.7%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.89 84.0 7.64e-01 100.0% 77.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 46.0 4.48e-01 97.5% 70.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 38.0 4.28e-01 76.5% 83.1%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 38.0 4.20e-01 77.8% 76.1%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 40.0 4.42e-01 92.6% 87.3%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.04e-01 86.4% 71.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 37.0 3.94e-01 90.1% 70.8%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 39.0 4.10e-01 71.6% 78.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 4.15e-01 93.8% 88.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.98e-01 88.9% 88.1%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 3.94e-01 72.8% 94.4%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.53 30.0 3.57e-01 74.1% 93.5%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 38.0 3.96e-01 95.1% 84.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.85e-01 75.3% 88.7%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 27.0 3.34e-01 84.0% 100.0%
2k31A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 3.28e-01 84.0% 62.4%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.51 29.0 3.16e-01 92.6% 68.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3659428 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.96 92.0 8.54e-01 100.0% 85.6%
3346946 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.96 92.0 8.01e-01 100.0% 73.5%
4295522 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.96 92.0 8.24e-01 100.0% 81.9%
3434770 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.95 91.0 8.19e-01 100.0% 79.0%
3659060 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.94 90.0 7.67e-01 100.0% 70.0%
3327525 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.94 90.0 7.34e-01 100.0% 63.7%
184706 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.89 84.0 7.64e-01 100.0% 77.9%
3702975 3556.1.1.0 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 0.88 79.0 7.48e-01 95.1% 100.0%
3702974 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.87 56.0 6.84e-01 71.6% 100.0%
3714230 3556.1.1.0 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 0.85 68.0 7.36e-01 96.3% 100.0%
1094905 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.63 39.0 4.19e-01 77.8% 72.9%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 41.0 4.71e-01 93.8% 100.0%
4593997 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 38.0 4.14e-01 74.1% 76.9%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.61 41.0 4.21e-01 97.5% 71.2%
4629735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 36.0 3.99e-01 75.3% 75.4%
3605879 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 32.0 4.02e-01 84.0% 91.1%
3316780 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.59 37.0 4.20e-01 80.2% 86.7%
4339993 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.59 42.0 4.07e-01 100.0% 67.8%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.58 37.0 4.07e-01 91.4% 81.2%
3412753 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 45.0 2.91e-01 84.0% 51.3%
4557124 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.57 39.0 4.09e-01 92.6% 80.0%
3931799 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 31.0 3.84e-01 77.8% 95.6%
4011095 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 43.0 2.73e-01 84.0% 90.9%
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.55 38.0 4.13e-01 71.6% 89.2%
3715091 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.55 30.0 3.26e-01 88.9% 63.1%
4302485 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 45.0 3.66e-01 90.1% 90.0%
5041236 375.13.1.1 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.53 35.0 4.09e-01 76.5% 98.2%
3247746 5.1.4.303 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid 0.53 47.0 3.12e-01 96.3% 34.8%
4961197 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 32.0 3.41e-01 100.0% 68.6%
3587060 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 41.0 4.27e-01 86.4% 89.3%
4332669 243.3.1.52 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.53 43.0 2.62e-01 91.4% 80.5%
3284762 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.53 39.0 3.32e-01 81.5% 66.2%
4929550 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.52 40.0 4.19e-01 97.5% 95.7%
3511769 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 41.0 3.43e-01 85.2% 89.0%
4231809 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 46.0 2.85e-01 98.8% 52.4%
3380684 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 31.0 3.83e-01 90.1% 100.0%
4067906 243.3.1.52 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.52 44.0 2.78e-01 97.5% 30.4%
3279119 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.51 38.0 3.33e-01 81.5% 70.4%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.51 37.0 3.35e-01 75.3% 64.5%
5037511 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 42.0 2.74e-01 95.1% 46.0%
D2 high residues 94-218
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.78 46.0 5.55e-01 93.6% 88.0%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 49.0 4.03e-01 84.8% 55.8%
4g08A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.59 31.0 4.08e-01 78.4% 91.4%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.59 47.0 3.82e-01 85.6% 56.7%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 28.0 3.68e-01 81.6% 82.4%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.57 30.0 3.76e-01 80.8% 83.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 30.0 3.88e-01 77.6% 92.6%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 30.0 3.62e-01 80.8% 78.0%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.56 29.0 3.20e-01 75.2% 60.8%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 29.0 3.12e-01 93.6% 60.0%
7sf8A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 38.0 3.16e-01 80.0% 39.4%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 26.0 3.41e-01 80.0% 86.6%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 28.0 3.54e-01 77.6% 92.8%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 24.0 3.36e-01 80.0% 96.5%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 29.0 3.26e-01 83.2% 70.4%
1w66A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 35.0 3.01e-01 70.4% 90.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705738 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.87 35.0 5.13e-01 80.0% 81.7%
3191135 376.1.1.94 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_IRF-2BP1_2 0.83 32.0 3.87e-01 78.4% 54.1%
3573660 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 30.0 3.71e-01 77.6% 51.8%
4015661 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.82 32.0 3.53e-01 79.2% 44.8%
3684391 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.81 31.0 3.65e-01 78.4% 50.0%
3482300 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 30.0 3.68e-01 78.4% 52.9%
4998314 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 32.0 4.58e-01 86.4% 90.0%
3066048 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.68 31.0 3.65e-01 91.2% 59.3%
3607878 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 25.0 2.92e-01 79.2% 49.4%
3783880 376.1.3.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.60 36.0 4.00e-01 78.4% 73.3%
3974037 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.59 31.0 3.91e-01 77.6% 84.0%
260014 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.59 31.0 4.08e-01 78.4% 91.4%
4683271 327.16.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.59 31.0 3.98e-01 78.4% 90.0%
4382717 304.11.1.2 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.59 30.0 3.72e-01 76.8% 77.5%
4943668 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 30.0 3.46e-01 72.8% 68.9%
3601388 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 30.0 3.67e-01 77.6% 84.0%
3855824 221.1.1.53 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_3 0.55 34.0 3.87e-01 88.0% 83.3%
4378578 304.11.1.2 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.55 28.0 3.66e-01 77.6% 87.1%
3255588 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 27.0 3.76e-01 81.6% 92.3%
5054239 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.55 30.0 3.64e-01 77.6% 82.3%
3578641 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.55 29.0 3.69e-01 77.6% 88.6%
3700330 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.55 30.0 3.71e-01 75.2% 83.7%
3363127 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.55 27.0 3.66e-01 77.6% 90.8%
5076107 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 29.0 3.62e-01 79.2% 82.5%
3293767 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.54 27.0 3.46e-01 80.0% 81.3%
4958990 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.53 27.0 3.58e-01 80.0% 93.8%
4938388 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.52 37.0 2.98e-01 74.4% 84.3%
3405197 304.7.1.1 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 0.51 27.0 3.24e-01 80.0% 76.2%
3595319 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 34.0 3.51e-01 88.0% 73.0%