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OP491958.1__UZV39640.1__APT65_00025__00025

Bact-Vir

OP491958.1__UZV39640.1__APT65_00025__00025

Identity

Accession:
OP491958 ↗
Kingdom:
phage

Quality

52.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Trabzonvirus_APT65

TaxID: 3432974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 318-372
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fnnA03 6.10.140.440 Special › Helix non-globular › Helix Hairpins › 0.82 57.0 6.40e-01 76.4% 93.0%
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.73 46.0 3.31e-01 76.4% 24.7%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3336677 605.1.1.132 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 0.98 83.0 7.30e-01 89.1% 65.3%
3829175 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.94 73.0 5.48e-01 83.6% 37.5%
3595948 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.89 71.0 6.33e-01 92.7% 62.7%
3906819 192.17.1.6 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 0.89 74.0 5.16e-01 100.0% 32.0%
3963486 109.4.1.190 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 0.86 68.0 4.51e-01 85.5% 23.4%
4604030 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.81 57.0 3.67e-01 74.5% 38.7%
5017916 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.78 59.0 3.88e-01 80.0% 24.8%
3301462 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.72 62.0 4.50e-01 100.0% 36.1%
5014652 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.71 60.0 3.83e-01 89.1% 81.3%
3292649 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.65 57.0 4.12e-01 100.0% 34.8%