←Back to structures
OP491958.1__UZV39670.1__APT65_00067__00055
Bact-VirOP491958.1__UZV39670.1__APT65_00067__00055
Identity
- Accession:
- OP491958 ↗
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Taxonomy
TaxID: 3432974
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.68 | 47.0 | 4.70e-01 | 72.3% | 77.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.65 | 44.0 | 4.22e-01 | 70.8% | 68.4% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.63 | 45.0 | 3.49e-01 | 75.4% | 96.5% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 44.0 | 3.78e-01 | 73.8% | 47.1% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.62 | 42.0 | 3.73e-01 | 70.8% | 76.0% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.62 | 42.0 | 3.55e-01 | 70.8% | 63.4% |
| 3lzkB00 | 3.90.850.10 | Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain | 0.61 | 42.0 | 2.67e-01 | 70.8% | 60.8% |
| 1cqmA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.60 | 42.0 | 3.78e-01 | 75.4% | 99.0% |
| 1g0dA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 43.0 | 3.42e-01 | 76.9% | 47.4% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 42.0 | 3.16e-01 | 73.8% | 33.5% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.59 | 40.0 | 3.08e-01 | 72.3% | 89.2% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.59 | 44.0 | 3.12e-01 | 84.6% | 23.9% |
| 4zfjD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.58 | 44.0 | 3.13e-01 | 84.6% | 26.0% |
| 1r5pB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 40.0 | 3.66e-01 | 75.4% | 98.9% |
| 3ndcA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 40.0 | 3.33e-01 | 75.4% | 39.0% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.57 | 44.0 | 3.48e-01 | 84.6% | 38.5% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.56 | 39.0 | 3.37e-01 | 73.8% | 46.4% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 42.0 | 4.10e-01 | 86.2% | 92.1% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.55 | 38.0 | 3.50e-01 | 72.3% | 92.0% |
| 3bbaA00 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.54 | 36.0 | 2.55e-01 | 70.8% | 37.4% |
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.54 | 41.0 | 3.02e-01 | 84.6% | 44.6% |
| 2cyyA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.54 | 38.0 | 3.49e-01 | 78.5% | 83.2% |
| 1pqzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 3.22e-01 | 70.8% | 56.4% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.54 | 36.0 | 3.48e-01 | 70.8% | 100.0% |
| 4ksnA00 | 6.20.250.80 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.53 | 36.0 | 3.67e-01 | 72.3% | 93.8% |
| 1s4dE02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 40.0 | 3.20e-01 | 83.1% | 74.8% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.22e-01 | 75.4% | 53.1% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.51 | 35.0 | 2.99e-01 | 72.3% | 46.9% |
| 3kysA00 | 2.70.50.80 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › | 0.51 | 41.0 | 3.00e-01 | 95.4% | 89.9% |
| 2i0kA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.51 | 35.0 | 2.95e-01 | 75.4% | 92.1% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945582 | 304.17.1.0 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain | 0.70 | 48.0 | 4.73e-01 | 72.3% | 100.0% |
| 4978219 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.69 | 48.0 | 4.42e-01 | 73.8% | 87.1% |
| 4022610 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.67 | 46.0 | 2.93e-01 | 72.3% | 49.3% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.67 | 46.0 | 4.47e-01 | 72.3% | 68.0% |
| 4019686 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.65 | 44.0 | 2.85e-01 | 70.8% | 40.6% |
| 3281602 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.65 | 45.0 | 5.04e-01 | 80.0% | 100.0% |
| 4986330 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 45.0 | 4.09e-01 | 73.8% | 85.6% |
| 4972094 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.64 | 44.0 | 4.07e-01 | 72.3% | 100.0% |
| 4030365 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.64 | 47.0 | 4.08e-01 | 80.0% | 75.2% |
| 3609261 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 42.0 | 3.65e-01 | 73.8% | 42.9% |
| 3573560 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 43.0 | 3.84e-01 | 73.8% | 48.0% |
| 3593642 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 41.0 | 3.73e-01 | 73.8% | 47.4% |
| 4654074 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.62 | 45.0 | 4.15e-01 | 80.0% | 84.4% |
| 3288892 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.62 | 41.0 | 4.56e-01 | 72.3% | 100.0% |
| 5067296 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.62 | 42.0 | 3.98e-01 | 70.8% | 92.5% |
| 4107956 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.61 | 41.0 | 3.44e-01 | 73.8% | 38.3% |
| 5035580 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.61 | 43.0 | 4.07e-01 | 75.4% | 98.8% |
| 3615104 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.61 | 45.0 | 3.99e-01 | 80.0% | 76.8% |
| 4151900 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.61 | 45.0 | 3.53e-01 | 80.0% | 61.1% |
| 4327532 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.61 | 44.0 | 3.70e-01 | 80.0% | 62.5% |
| 5027350 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.60 | 43.0 | 3.42e-01 | 76.9% | 66.7% |
| 3989417 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.60 | 42.0 | 3.56e-01 | 73.8% | 64.5% |
| 3256773 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 3.53e-01 | 84.6% | 58.4% |
| 3789140 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.59 | 45.0 | 3.60e-01 | 83.1% | 66.2% |
| 3594101 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.59 | 42.0 | 3.28e-01 | 76.9% | 56.1% |
| 4175430 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.58 | 48.0 | 3.41e-01 | 100.0% | 64.6% |
| 3493732 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 40.0 | 3.60e-01 | 73.8% | 49.5% |
| 3321071 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.58 | 43.0 | 3.39e-01 | 80.0% | 62.1% |
| 4951704 | 210.1.3.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 | 0.58 | 44.0 | 3.11e-01 | 86.2% | 26.5% |
| 3737756 | 251.1.1.1 ↗ | a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS | 0.57 | 39.0 | 3.40e-01 | 70.8% | 93.0% |
| 3483429 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 3.28e-01 | 76.9% | 62.9% |
| 3504586 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.57 | 41.0 | 3.20e-01 | 78.5% | 55.5% |
| 3588402 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 39.0 | 3.36e-01 | 73.8% | 46.4% |
| 3726900 | 11.1.1.642 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 | 0.56 | 39.0 | 3.32e-01 | 72.3% | 61.8% |
| 5056439 | 304.4.1.1 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg | 0.56 | 40.0 | 3.64e-01 | 76.9% | 93.7% |
| 3723602 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.55 | 37.0 | 2.45e-01 | 72.3% | 46.0% |
| 3503369 | 11.1.4.76 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_5th | 0.55 | 37.0 | 3.36e-01 | 73.8% | 50.0% |
| 3700503 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 2.69e-01 | 73.8% | 22.9% |
| 4489065 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.54 | 41.0 | 3.37e-01 | 83.1% | 62.4% |
| 4995672 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.54 | 37.0 | 3.94e-01 | 72.3% | 94.0% |
| 1063821 | 3707.1.1.1 ↗ | a+b two layers › SdbC C-terminal domain › SdbC C-terminal domain › SdbC C-terminal domain › SdbC_C | 0.53 | 36.0 | 3.74e-01 | 72.3% | 80.6% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.53 | 40.0 | 3.65e-01 | 83.1% | 71.1% |
| 3255812 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 44.0 | 2.76e-01 | 100.0% | 42.9% |
| 5055801 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.51 | 35.0 | 3.70e-01 | 83.1% | 90.6% |
| 4958689 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.50 | 37.0 | 3.85e-01 | 83.1% | 91.7% |