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OP491958.1__UZV39692.1__APT65_00089__00077

Bact-Vir

OP491958.1__UZV39692.1__APT65_00089__00077

Identity

Accession:
OP491958 ↗
Kingdom:
phage

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Grimontviridae› Trabzonvirus_APT65

TaxID: 3432974

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-90
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 57.0 5.69e-01 73.5% 68.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.83 56.0 6.28e-01 73.5% 90.4%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 54.0 6.45e-01 77.9% 100.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 60.0 6.03e-01 80.9% 76.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 56.0 5.70e-01 72.1% 74.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 55.0 5.81e-01 70.6% 96.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 56.0 5.90e-01 73.5% 87.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 55.0 5.86e-01 72.1% 98.3%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 54.0 5.29e-01 72.1% 78.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 57.0 5.59e-01 80.9% 71.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.78 57.0 5.89e-01 76.5% 95.2%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.77 54.0 5.99e-01 79.4% 92.6%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 53.0 5.50e-01 72.1% 90.6%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 55.0 5.63e-01 75.0% 97.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 5.82e-01 79.4% 82.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 54.0 4.78e-01 73.5% 80.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 6.09e-01 80.9% 88.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 54.0 5.36e-01 75.0% 80.3%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 53.0 5.06e-01 73.5% 75.6%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 52.0 5.31e-01 72.1% 89.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 57.0 5.68e-01 80.9% 90.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.48e-01 79.4% 78.1%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 53.0 5.56e-01 75.0% 96.7%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 4.79e-01 73.5% 80.7%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 5.39e-01 72.1% 94.0%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 4.96e-01 80.9% 85.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 53.0 5.25e-01 79.4% 81.9%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 4.80e-01 75.0% 69.1%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 51.0 5.23e-01 76.5% 98.4%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 5.08e-01 75.0% 90.0%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.65e-01 75.0% 72.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 49.0 4.98e-01 77.9% 98.5%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.16e-01 73.5% 90.9%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 49.0 3.54e-01 77.9% 42.2%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.65 44.0 3.24e-01 72.1% 83.6%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.64 44.0 3.26e-01 72.1% 33.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.64 44.0 4.54e-01 72.1% 81.8%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.39e-01 76.5% 74.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 4.08e-01 73.5% 82.8%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 44.0 3.59e-01 73.5% 46.7%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.44e-01 75.0% 80.6%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 3.28e-01 75.0% 50.6%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 42.0 2.94e-01 75.0% 68.5%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 42.0 2.77e-01 75.0% 37.2%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 44.0 3.62e-01 88.2% 41.8%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 48.0 3.01e-01 97.1% 52.0%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 39.0 2.98e-01 76.5% 59.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.20e-01 100.0% 87.9%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.53 37.0 3.80e-01 72.1% 82.5%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3609597 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.92 56.0 6.03e-01 73.5% 71.7%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.90 59.0 6.52e-01 75.0% 83.6%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.89 59.0 6.24e-01 73.5% 76.7%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 57.0 6.34e-01 79.4% 81.8%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.87 56.0 6.06e-01 73.5% 77.6%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 57.0 6.00e-01 73.5% 74.2%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.86 58.0 6.47e-01 79.4% 87.3%
5057234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 58.0 5.82e-01 76.5% 68.6%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.85 59.0 5.50e-01 79.4% 59.0%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.85 58.0 6.40e-01 76.5% 87.3%
140210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 57.0 5.69e-01 73.5% 68.1%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.85 56.0 6.40e-01 73.5% 92.0%
None — 0.84 60.0 3.20e-01 80.9% 3.9%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.84 60.0 5.15e-01 80.9% 50.0%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.84 59.0 3.13e-01 80.9% 3.2%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.83 59.0 5.68e-01 80.9% 66.7%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 58.0 6.37e-01 75.0% 89.1%
3428486 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 58.0 5.48e-01 80.9% 62.5%
5038340 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.82 58.0 5.60e-01 73.5% 73.3%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 56.0 5.76e-01 73.5% 73.8%
3850775 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.81 58.0 5.92e-01 77.9% 76.9%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 57.0 4.15e-01 80.9% 28.6%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 57.0 6.31e-01 80.9% 90.9%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 56.0 5.57e-01 72.1% 81.4%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.80 59.0 6.26e-01 85.3% 86.7%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.80 56.0 5.96e-01 73.5% 88.3%
3399912 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 54.0 5.39e-01 70.6% 80.0%
3213114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 61.0 5.54e-01 82.4% 82.2%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 58.0 6.18e-01 77.9% 100.0%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.78 55.0 5.88e-01 73.5% 88.3%
3240651 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 55.0 5.21e-01 73.5% 72.5%
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.96e-01 75.0% 85.0%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 52.0 5.71e-01 75.0% 85.5%
3841524 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.78 55.0 4.61e-01 73.5% 54.5%
3480350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 56.0 5.72e-01 75.0% 87.7%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 54.0 5.70e-01 72.1% 93.3%
3638174 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.77 56.0 4.91e-01 75.0% 53.7%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 58.0 5.38e-01 89.7% 63.5%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.77 64.0 5.26e-01 88.2% 77.4%
4081631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 52.0 5.06e-01 70.6% 77.3%
3413864 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 67.0 5.10e-01 100.0% 47.3%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.77 58.0 4.93e-01 79.4% 51.4%
3721973 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 52.0 5.10e-01 72.1% 73.3%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.76 66.0 4.88e-01 100.0% 37.7%
3523918 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.76 53.0 5.45e-01 73.5% 83.1%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 55.0 5.68e-01 76.5% 90.6%
3236054 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 56.0 5.42e-01 77.9% 77.3%
4147366 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.75 50.0 5.82e-01 70.6% 97.9%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.75 57.0 5.56e-01 80.9% 73.3%
3531894 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.74 54.0 5.54e-01 76.5% 100.0%
4018596 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.74 52.0 4.57e-01 75.0% 50.0%
3482683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 5.79e-01 77.9% 96.7%
3246255 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 51.0 5.07e-01 72.1% 82.9%
3514867 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 55.0 5.33e-01 79.4% 82.7%
5025104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.72e-01 76.5% 98.0%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 60.0 5.79e-01 88.2% 85.3%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 57.0 5.49e-01 83.8% 84.0%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 59.0 3.20e-01 88.2% 89.2%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.37e-01 80.9% 94.3%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 54.0 3.87e-01 80.9% 31.1%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 55.0 5.05e-01 82.4% 76.5%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 48.0 5.28e-01 76.5% 89.1%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.69 51.0 4.80e-01 80.9% 63.5%
1263580 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 48.0 4.69e-01 73.5% 88.0%
1263586 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.77e-01 73.5% 91.7%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.91e-01 73.5% 95.4%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 50.0 5.00e-01 80.9% 77.1%
3620554 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.61e-01 82.4% 61.1%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.84e-01 70.6% 90.9%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.78e-01 75.0% 85.9%
3782826 4.1.1.39 ↗ beta barrels › SH3 › SH3 › SH3 › SHD1 0.64 43.0 4.23e-01 70.6% 66.7%