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OP495736.1__UYE91978.1__KJBENDCP_00008__00008

Bact-Vir

OP495736.1__UYE91978.1__KJBENDCP_00008__00008

Identity

Accession:
OP495736 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_vB_KmiS-Kmi2C

TaxID: 2982913

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 58-117
PDB
Domain cluster: rep: OP296522.1__UYD72065.1__VG_p17__00017__D58-122
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 61.0 4.81e-01 100.0% 53.6%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 49.0 4.03e-01 76.7% 88.8%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.68 57.0 3.93e-01 100.0% 52.8%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.68 58.0 4.96e-01 100.0% 98.0%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.65 51.0 4.35e-01 86.7% 91.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 4.22e-01 95.0% 56.1%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.63 40.0 4.61e-01 85.0% 97.5%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 43.0 4.08e-01 90.0% 59.7%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.62 46.0 4.44e-01 81.7% 78.9%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 52.0 3.66e-01 100.0% 87.3%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 4.08e-01 100.0% 48.2%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 41.0 4.04e-01 71.7% 96.9%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.59 45.0 4.04e-01 86.7% 94.4%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 51.0 3.59e-01 100.0% 31.4%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 48.0 4.06e-01 98.3% 66.7%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.58 46.0 3.31e-01 93.3% 89.5%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.47e-01 85.0% 62.4%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 49.0 4.05e-01 91.7% 62.5%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.82e-01 85.0% 85.0%
8e7cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 43.0 3.96e-01 81.7% 67.9%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.97e-01 85.0% 83.9%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 4.04e-01 91.7% 61.6%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 48.0 4.05e-01 100.0% 68.5%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 51.0 3.53e-01 100.0% 66.3%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 39.0 4.01e-01 75.0% 78.2%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 3.91e-01 71.7% 100.0%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 41.0 3.22e-01 90.0% 37.1%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.61e-01 88.3% 86.2%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 47.0 4.43e-01 98.3% 98.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.61e-01 86.7% 70.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.56 46.0 3.55e-01 93.3% 72.5%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 42.0 3.61e-01 81.7% 83.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.70e-01 81.7% 86.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 44.0 4.43e-01 90.0% 100.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.30e-01 85.0% 95.0%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 3.98e-01 78.3% 95.2%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 39.0 2.86e-01 90.0% 26.7%
1vu2300 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.38e-01 90.0% 68.5%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 43.0 3.50e-01 96.7% 80.6%
4pq0A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.46e-01 81.7% 80.6%
1ce7A02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.53 36.0 3.41e-01 73.3% 98.7%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 42.0 3.79e-01 90.0% 82.6%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 45.0 3.73e-01 100.0% 94.6%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 36.0 2.97e-01 86.7% 38.9%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 43.0 4.06e-01 96.7% 89.5%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.51 43.0 2.87e-01 98.3% 53.3%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 38.0 3.44e-01 88.3% 84.5%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.51 35.0 3.34e-01 93.3% 60.0%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.29e-01 95.0% 92.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.78 71.0 5.13e-01 100.0% 45.6%
2770320 219.1.1.39 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1175 0.77 67.0 4.72e-01 100.0% 42.2%
4025925 219.1.1.37 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C97 0.72 58.0 4.56e-01 88.3% 46.4%
2141907 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 48.0 3.33e-01 73.3% 46.7%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 57.0 4.61e-01 100.0% 56.2%
3662509 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.69 56.0 4.63e-01 93.3% 87.8%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.68 60.0 5.02e-01 100.0% 62.9%
7413 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.68 57.0 3.93e-01 100.0% 52.6%
3599176 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 54.0 3.57e-01 100.0% 41.6%
5009412 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.66 52.0 3.39e-01 85.0% 64.6%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 52.0 3.80e-01 100.0% 51.8%
3980228 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 55.0 4.35e-01 100.0% 52.8%
3619334 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 4.10e-01 81.7% 91.1%
3219050 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 48.0 4.35e-01 83.3% 87.5%
2142060 1.1.5.22 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S32 0.62 45.0 3.13e-01 93.3% 23.3%
3458699 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.60 41.0 3.08e-01 73.3% 28.2%
5033093 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 3.99e-01 95.0% 96.5%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 49.0 3.20e-01 100.0% 49.2%
4965523 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.94e-01 90.0% 98.2%
3636498 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 49.0 3.15e-01 100.0% 30.7%
4215468 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.58 51.0 3.00e-01 100.0% 12.6%
3198252 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.58 50.0 3.63e-01 96.7% 45.3%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 45.0 3.73e-01 88.3% 67.0%
4100425 11.1.4.90 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF4550 0.58 46.0 3.69e-01 91.7% 68.5%
3739929 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 46.0 3.06e-01 100.0% 58.1%
4950368 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 44.0 3.36e-01 90.0% 81.3%
4588060 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.56 49.0 3.35e-01 100.0% 59.5%
3399079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.40e-01 80.0% 65.5%
3838919 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 42.0 3.36e-01 88.3% 97.1%
4478186 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.18e-01 73.3% 100.0%
3593931 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.07e-01 81.7% 50.6%
3204035 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.55 47.0 2.94e-01 96.7% 25.0%
3386489 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 44.0 3.32e-01 95.0% 66.5%
3235531 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.55 37.0 2.59e-01 73.3% 51.2%
3705577 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.55 40.0 3.08e-01 80.0% 53.3%
3595430 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 42.0 3.00e-01 88.3% 69.5%
4584002 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 40.0 3.43e-01 83.3% 91.4%
4930436 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.53 39.0 3.34e-01 83.3% 88.7%
3789008 1.1.5.85 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S64 0.53 45.0 2.92e-01 100.0% 24.4%
3516743 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.53 39.0 2.94e-01 81.7% 48.8%
3611221 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.53 39.0 3.39e-01 83.3% 82.9%
2324014 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 43.0 3.22e-01 100.0% 86.2%
4485576 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.52 44.0 2.93e-01 100.0% 25.9%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 38.0 3.41e-01 83.3% 85.3%
3210702 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 44.0 2.89e-01 98.3% 64.3%
3211176 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 40.0 2.76e-01 88.3% 27.5%
3994301 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 42.0 3.21e-01 98.3% 73.5%
3278616 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.19e-01 83.3% 76.8%
3618959 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 43.0 3.35e-01 100.0% 82.0%
5002631 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 39.0 3.23e-01 86.7% 60.0%
5078006 375.1.3.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.50 37.0 3.58e-01 88.3% 70.0%
3363778 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.50 36.0 3.77e-01 100.0% 83.6%
4344687 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.50 39.0 3.42e-01 93.3% 86.7%