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OP535465.1__UYA57475.1__SCREM1_18__00018

Bact-Vir

OP535465.1__UYA57475.1__SCREM1_18__00018

Identity

Accession:
OP535465 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-79
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.73 43.0 3.86e-01 79.5% 43.3%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.65 38.0 4.29e-01 80.8% 76.7%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 42.0 3.54e-01 79.5% 39.1%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.64 39.0 3.59e-01 75.6% 47.1%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.64 52.0 3.92e-01 100.0% 37.4%
4k02A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 50.0 4.22e-01 83.3% 84.3%
2nujA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 50.0 3.98e-01 83.3% 73.6%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 3.64e-01 80.8% 40.8%
2w3xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 51.0 4.11e-01 85.9% 88.2%
2q2bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 50.0 4.02e-01 83.3% 70.2%
5n1tA03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.63 44.0 4.55e-01 73.1% 90.1%
3vrdB03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.62 44.0 4.57e-01 74.4% 91.9%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.62 56.0 4.84e-01 100.0% 81.8%
1lo7A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 49.0 4.01e-01 84.6% 83.6%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.61 43.0 3.75e-01 100.0% 46.8%
2v1oB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 47.0 3.76e-01 82.1% 75.0%
2pzhA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 49.0 4.08e-01 87.2% 95.5%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 45.0 3.94e-01 80.8% 89.1%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.59 45.0 4.09e-01 79.5% 79.4%
3nv0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 3.62e-01 89.7% 39.3%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 45.0 3.31e-01 83.3% 96.3%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 41.0 3.30e-01 98.7% 38.5%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.38e-01 100.0% 25.1%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 50.0 3.83e-01 100.0% 41.3%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 42.0 3.70e-01 80.8% 87.9%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.57 50.0 4.36e-01 97.4% 83.6%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 41.0 2.97e-01 80.8% 29.8%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 49.0 4.14e-01 100.0% 83.3%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.12e-01 100.0% 90.9%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.25e-01 79.5% 41.8%
2z0uA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 48.0 4.14e-01 100.0% 82.8%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.59e-01 76.9% 68.9%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 48.0 3.94e-01 100.0% 79.0%
2b3rA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 47.0 4.10e-01 100.0% 84.7%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.54 45.0 2.96e-01 100.0% 29.0%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 3.86e-01 100.0% 94.6%
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.54 45.0 3.16e-01 100.0% 56.4%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.72e-01 98.7% 59.6%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.52e-01 82.1% 70.4%
3l9bA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 46.0 3.97e-01 98.7% 86.5%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 39.0 2.61e-01 80.8% 32.9%
2dm4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.77e-01 80.8% 79.8%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.64e-01 78.2% 81.4%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 44.0 3.92e-01 98.7% 90.7%
5h4zA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 44.0 3.84e-01 100.0% 79.8%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 45.0 3.75e-01 100.0% 81.2%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 44.0 3.68e-01 100.0% 54.8%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 43.0 3.81e-01 98.7% 88.7%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 39.0 3.14e-01 82.1% 87.7%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.61e-01 100.0% 90.8%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 45.0 3.86e-01 100.0% 80.8%
2ep6A01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 43.0 3.84e-01 100.0% 77.9%
3hlkA01 2.60.40.2240 Mainly Beta › Sandwich › Immunoglobulin-like › Acyl-CoA thioester hydrolase/BAAT N-terminal domain 0.51 40.0 3.36e-01 85.9% 88.1%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.75e-01 83.3% 82.4%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.50 41.0 3.61e-01 100.0% 58.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932481 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.69 51.0 4.25e-01 78.2% 46.2%
3927497 2484.5.1.3 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.68 50.0 4.98e-01 78.2% 75.0%
4105352 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.67 44.0 2.96e-01 78.2% 19.0%
3389940 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.67 42.0 3.98e-01 78.2% 54.4%
3741415 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.66 52.0 3.94e-01 83.3% 60.0%
3487450 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 45.0 3.71e-01 78.2% 38.6%
3622016 2484.5.1.6 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 0.66 46.0 4.22e-01 78.2% 55.2%
4023469 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.64 44.0 3.60e-01 79.5% 39.3%
3919833 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.64 51.0 3.34e-01 94.9% 20.0%
3368394 4325.1.1.11 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.64 47.0 4.42e-01 78.2% 64.2%
3958888 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 43.0 3.44e-01 78.2% 35.5%
2546240 5.1.3.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase 0.63 54.0 4.04e-01 98.7% 74.5%
4970458 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.63 49.0 4.07e-01 83.3% 87.3%
4947486 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 44.0 3.66e-01 76.9% 42.2%
3958663 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.62 43.0 3.26e-01 78.2% 30.6%
3819476 5.1.4.430 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30506 0.62 51.0 3.18e-01 93.6% 39.0%
2771373 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.62 49.0 3.82e-01 87.2% 40.4%
5064324 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.61 45.0 3.95e-01 79.5% 62.5%
3742632 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 54.0 3.67e-01 100.0% 28.6%
3267746 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 47.0 4.65e-01 100.0% 80.0%
3258227 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 45.0 3.72e-01 80.8% 64.3%
3819047 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.60 44.0 3.65e-01 78.2% 45.7%
3727921 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 46.0 3.78e-01 83.3% 46.4%
3667884 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.59 52.0 3.80e-01 100.0% 61.8%
4010913 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 45.0 3.84e-01 89.7% 50.0%
3417120 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 51.0 4.48e-01 100.0% 75.8%
4928622 222.1.1.21 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlK 0.58 43.0 3.76e-01 80.8% 83.2%
3452819 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.58 43.0 4.08e-01 97.4% 65.3%
3398074 11.1.1.822 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.58 44.0 3.79e-01 80.8% 71.7%
3608247 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.40e-01 82.1% 81.2%
4029737 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.70e-01 93.6% 24.3%
3907835 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.82e-01 78.2% 73.0%
4942977 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.93e-01 91.0% 86.4%
3771405 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.35e-01 83.3% 75.2%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 43.0 3.44e-01 84.6% 42.6%
3254677 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 47.0 4.26e-01 97.4% 70.0%
4004146 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.28e-01 79.5% 58.0%
4992169 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.52e-01 78.2% 80.7%
4350552 11.2.1.43 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2+FerI 0.55 48.0 3.18e-01 98.7% 35.4%
4952885 3414.1.1.13 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › PF29994 0.54 38.0 3.57e-01 83.3% 60.0%
4873579 4019.1.1.3 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.54 40.0 4.00e-01 94.9% 79.5%
4277089 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 48.0 3.82e-01 100.0% 73.6%
3751713 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 47.0 3.82e-01 98.7% 76.7%
3785390 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 46.0 3.97e-01 96.2% 95.2%
3236478 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 47.0 3.84e-01 100.0% 75.8%
3684565 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 46.0 3.70e-01 98.7% 76.1%
3254373 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 46.0 3.77e-01 98.7% 82.8%
3907592 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 46.0 3.66e-01 98.7% 79.4%
3260251 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 46.0 3.80e-01 100.0% 91.0%
3275243 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 46.0 3.67e-01 98.7% 78.1%
3941135 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 45.0 3.71e-01 98.7% 78.6%
4965666 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.51 41.0 3.27e-01 92.3% 42.2%
3896170 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.51e-01 83.3% 63.5%
3241736 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.50 44.0 3.34e-01 100.0% 41.0%