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OP535465.1__UYA57564.1__SCREM1_107__00107

Bact-Vir

OP535465.1__UYA57564.1__SCREM1_107__00107

Identity

Accession:
OP535465 ↗
Kingdom:
phage

Quality

66.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Synechococcus_phage_S-CREM1

TaxID: 2982919

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-54
PDB
D2 high residues 86-131
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 4.25e-01 100.0% 45.5%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.67 56.0 4.59e-01 100.0% 76.3%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.67 56.0 4.72e-01 100.0% 91.8%
2a1xA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.66 51.0 3.18e-01 84.8% 71.9%
3bh7B02 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.64 50.0 3.74e-01 87.0% 43.8%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 42.0 3.47e-01 89.1% 38.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.30e-01 89.1% 30.3%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 43.0 3.77e-01 89.1% 45.5%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.61 45.0 3.57e-01 87.0% 37.4%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 3.38e-01 80.4% 37.1%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.61 44.0 3.63e-01 82.6% 41.5%
6mroA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 50.0 3.39e-01 100.0% 55.2%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 41.0 3.36e-01 87.0% 36.0%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.24e-01 100.0% 63.2%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 38.0 3.34e-01 80.4% 41.1%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 38.0 3.16e-01 87.0% 36.0%
7jrjK01 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.58 44.0 3.13e-01 87.0% 36.5%
3up9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 47.0 3.39e-01 93.5% 65.2%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 44.0 3.52e-01 89.1% 58.8%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 39.0 3.42e-01 80.4% 42.5%
2x8xX03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.57 46.0 3.83e-01 91.3% 78.3%
4q52A00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.57 45.0 3.21e-01 100.0% 80.6%
2ldyA01 3.30.70.1820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › L1 transposable element, RRM domain 0.56 43.0 3.42e-01 87.0% 39.8%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 43.0 3.69e-01 91.3% 82.9%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 46.0 3.32e-01 97.8% 78.5%
3gp9A00 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.55 43.0 3.20e-01 91.3% 43.6%
2zw5A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.15e-01 100.0% 53.4%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 43.0 2.93e-01 100.0% 42.9%
1a49A01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.54 46.0 3.17e-01 100.0% 68.2%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 43.0 3.49e-01 89.1% 61.4%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.54 48.0 3.34e-01 97.8% 74.3%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 40.0 3.23e-01 89.1% 69.5%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 37.0 3.14e-01 87.0% 40.4%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.08e-01 100.0% 58.1%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 39.0 2.57e-01 100.0% 20.8%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 38.0 3.22e-01 89.1% 58.8%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.52 45.0 2.86e-01 100.0% 71.9%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.73e-01 89.1% 83.2%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 37.0 2.95e-01 80.4% 43.7%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 35.0 2.99e-01 89.1% 39.8%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 37.0 2.77e-01 80.4% 31.8%
2onfA01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 35.0 2.74e-01 80.4% 34.3%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 39.0 2.72e-01 100.0% 52.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025055 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.73 62.0 4.96e-01 97.8% 87.4%
5062643 101.1.2.138 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3860 0.69 54.0 4.70e-01 100.0% 53.8%
3255400 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 56.0 3.30e-01 100.0% 25.2%
3697211 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.67 56.0 3.62e-01 100.0% 47.2%
3250924 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 44.0 3.53e-01 80.4% 34.0%
3177336 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 48.0 3.76e-01 89.1% 37.1%
3613897 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.64 47.0 4.22e-01 80.4% 56.9%
3189438 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.64 46.0 2.75e-01 89.1% 10.6%
3928453 206.1.1.44 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 0.64 43.0 2.58e-01 87.0% 8.8%
3436180 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 41.0 3.68e-01 82.6% 42.9%
3789510 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.63 44.0 3.72e-01 89.1% 41.2%
4966859 304.51.1.8 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C 0.62 50.0 4.26e-01 89.1% 58.7%
5039437 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 42.0 3.59e-01 82.6% 40.0%
4123272 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.62 52.0 4.29e-01 100.0% 82.2%
4961623 304.8.1.115 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › T2SSM_b 0.62 43.0 3.56e-01 80.4% 38.9%
3250928 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 44.0 3.81e-01 87.0% 46.3%
4933494 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.61 44.0 3.59e-01 89.1% 38.9%
4234397 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 41.0 3.36e-01 89.1% 33.0%
3277005 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.61 42.0 3.08e-01 82.6% 25.0%
4927015 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 43.0 3.71e-01 89.1% 46.3%
5026312 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.60 43.0 3.71e-01 87.0% 46.3%
4950495 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.60 42.0 3.67e-01 95.7% 45.0%
3282643 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 43.0 3.69e-01 89.1% 46.3%
4962586 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.59 43.0 3.63e-01 89.1% 44.6%
4085638 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 49.0 3.83e-01 95.7% 86.5%
4992122 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.59 43.0 3.74e-01 89.1% 49.3%
5011411 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 43.0 3.61e-01 87.0% 44.0%
3388031 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 42.0 3.65e-01 89.1% 46.3%
3597827 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 43.0 3.54e-01 87.0% 41.1%
3512169 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 40.0 3.39e-01 89.1% 37.8%
5047519 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.59 42.0 3.65e-01 89.1% 46.3%
5025196 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.59 42.0 3.62e-01 89.1% 45.0%
3995251 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.59 40.0 3.47e-01 87.0% 42.5%
4972140 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.58 46.0 3.37e-01 95.7% 52.0%
3993716 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.58 38.0 3.45e-01 80.4% 45.7%
3646462 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 46.0 3.21e-01 100.0% 38.9%
5000641 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.57 46.0 2.94e-01 97.8% 34.6%
5063981 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 40.0 3.59e-01 89.1% 49.3%
4969811 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.57 45.0 2.89e-01 100.0% 33.7%
4060458 304.8.1.22 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.56 39.0 3.41e-01 80.4% 42.5%
3506174 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.56 45.0 4.08e-01 97.8% 82.9%
3219815 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 40.0 3.52e-01 89.1% 46.3%
3504328 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 40.0 3.49e-01 89.1% 46.3%
4952712 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 38.0 3.43e-01 89.1% 46.6%
3406669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.81e-01 100.0% 71.0%
3449090 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 45.0 2.85e-01 100.0% 25.3%
3992019 1.1.1.14 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.55 45.0 3.40e-01 100.0% 39.2%
4832854 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.55 44.0 3.36e-01 97.8% 70.5%
4802890 3274.1.1.0 ↗ extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) 0.55 44.0 3.56e-01 91.3% 46.7%
4010833 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 40.0 3.23e-01 89.1% 38.0%
3342167 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 2.82e-01 87.0% 23.6%
3482553 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 39.0 2.31e-01 97.8% 9.5%
4071235 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.53 42.0 2.49e-01 100.0% 35.4%
3641833 304.8.1.57 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.53 38.0 2.97e-01 89.1% 31.7%
3940894 60.1.1.0 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.53 44.0 3.16e-01 100.0% 52.0%
3688605 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.52 40.0 3.15e-01 97.8% 86.2%
3660237 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 42.0 2.66e-01 100.0% 33.8%
3630392 7518.1.1.1 ↗ a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.52 45.0 3.30e-01 100.0% 76.7%
3586613 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 41.0 3.44e-01 89.1% 60.0%
3229293 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.52 40.0 2.55e-01 100.0% 54.8%
4941686 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 36.0 3.36e-01 89.1% 54.3%
3974775 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.51 37.0 3.13e-01 87.0% 41.1%
4205167 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 44.0 3.13e-01 100.0% 72.4%
3636696 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.50 42.0 2.49e-01 100.0% 52.0%