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OP535465.1__UYA57571.1__SCREM1_114__00114
Bact-VirOP535465.1__UYA57571.1__SCREM1_114__00114
Identity
- Accession:
- OP535465 ↗
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Synechococcus_phage_S-CREM1
TaxID: 2982919
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-77
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.68 | 57.0 | 5.25e-01 | 97.1% | 87.8% |
| 7xv3R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 54.0 | 3.61e-01 | 100.0% | 50.6% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.61 | 40.0 | 3.62e-01 | 100.0% | 48.9% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.60 | 39.0 | 3.79e-01 | 100.0% | 58.2% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.59 | 52.0 | 5.07e-01 | 100.0% | 89.5% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 46.0 | 4.33e-01 | 100.0% | 73.3% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.52 | 44.0 | 4.20e-01 | 100.0% | 94.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5062225 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.68 | 48.0 | 3.08e-01 | 73.5% | 77.2% |
| 3284592 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.65 | 54.0 | 4.78e-01 | 100.0% | 63.0% |
| 5017736 | 3625.1.1.0 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain | 0.63 | 42.0 | 3.74e-01 | 100.0% | 45.7% |
| 3286740 | 109.4.1.45 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD | 0.62 | 46.0 | 3.48e-01 | 100.0% | 34.2% |
| 3528706 | 192.29.1.11 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA | 0.61 | 52.0 | 4.36e-01 | 100.0% | 56.8% |
| 4928105 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.61 | 42.0 | 3.91e-01 | 72.1% | 62.4% |
| 3531698 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.61 | 44.0 | 3.54e-01 | 95.6% | 37.9% |
| 3764996 | 11.2.1.77 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerA | 0.60 | 51.0 | 4.37e-01 | 100.0% | 59.2% |
| 3492595 | 192.29.1.11 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA | 0.60 | 51.0 | 4.30e-01 | 100.0% | 60.0% |
| 3849157 | 192.29.1.11 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FerA | 0.60 | 51.0 | 4.27e-01 | 100.0% | 56.8% |
| 4380838 | 109.4.1.45 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD | 0.59 | 44.0 | 3.35e-01 | 100.0% | 34.4% |
| 3599824 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 3.19e-01 | 98.5% | 31.2% |
| 3630289 | 101.1.1.331 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF27957 | 0.58 | 41.0 | 3.86e-01 | 100.0% | 60.0% |
| 3285486 | 109.4.1.45 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD | 0.58 | 44.0 | 3.34e-01 | 100.0% | 35.0% |
| 3291199 | 109.4.1.45 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD | 0.57 | 45.0 | 3.40e-01 | 100.0% | 35.6% |
| 3579241 | 192.29.1.50 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA | 0.56 | 47.0 | 4.02e-01 | 100.0% | 56.5% |
| 3261964 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.54 | 45.0 | 3.02e-01 | 100.0% | 61.3% |
| 3705510 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.53 | 46.0 | 3.35e-01 | 100.0% | 37.1% |
| 3381517 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.52 | 44.0 | 3.77e-01 | 100.0% | 67.5% |