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OP558001.1__WJJ58428.1__NDO71_orf062__00062

Bact-Vir

OP558001.1__WJJ58428.1__NDO71_orf062__00062

Identity

Accession:
OP558001 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 50-132
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.76 65.0 5.60e-01 91.6% 92.0%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 61.0 5.48e-01 89.2% 78.3%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 62.0 5.38e-01 92.8% 96.1%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 61.0 5.08e-01 90.4% 88.7%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 61.0 5.22e-01 91.6% 89.2%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 63.0 5.39e-01 100.0% 91.9%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 58.0 4.98e-01 89.2% 95.5%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.69 62.0 4.25e-01 100.0% 83.8%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 57.0 4.84e-01 91.6% 87.5%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 52.0 4.60e-01 86.7% 79.7%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 54.0 4.62e-01 91.6% 82.1%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 46.0 3.69e-01 73.5% 86.0%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 53.0 3.32e-01 90.4% 17.4%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 56.0 4.49e-01 100.0% 67.9%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.62 51.0 3.28e-01 92.8% 19.0%
3p2nB02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 51.0 3.40e-01 89.2% 24.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.66e-01 83.1% 87.0%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 54.0 4.92e-01 100.0% 92.2%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.61 42.0 3.50e-01 71.1% 41.8%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.61 49.0 3.38e-01 91.6% 24.9%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 50.0 3.40e-01 91.6% 28.1%
3kh8B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 43.0 3.49e-01 74.7% 96.8%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 43.0 4.00e-01 75.9% 80.0%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 49.0 3.33e-01 90.4% 28.9%
2g18I00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.59 50.0 3.70e-01 98.8% 73.9%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.59 52.0 3.87e-01 98.8% 78.8%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 47.0 4.34e-01 88.0% 77.9%
3o2uA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 50.0 4.05e-01 100.0% 71.0%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.56 41.0 3.52e-01 79.5% 81.4%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 40.0 3.39e-01 75.9% 100.0%
4blqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 40.0 2.86e-01 78.3% 61.0%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.54 29.0 3.37e-01 91.6% 76.9%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.03e-01 85.5% 60.6%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.54 42.0 3.82e-01 91.6% 61.2%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 43.0 2.98e-01 88.0% 41.3%
3ii7A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 43.0 3.02e-01 91.6% 37.2%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 45.0 3.50e-01 98.8% 67.6%
1kpsC00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 45.0 3.66e-01 100.0% 73.7%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 3.16e-01 78.3% 61.9%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.57e-01 90.4% 68.0%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.49e-01 89.2% 69.0%
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.50 37.0 3.67e-01 80.7% 92.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3470047 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.76 58.0 5.83e-01 80.7% 83.5%
4011330 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.75 63.0 5.33e-01 91.6% 88.1%
5026021 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.74 63.0 5.34e-01 95.2% 96.4%
3974899 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.73 61.0 5.06e-01 90.4% 86.9%
3288890 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.73 57.0 4.93e-01 84.3% 90.0%
4373556 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.71 50.0 3.84e-01 74.7% 88.9%
3958465 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.70 54.0 4.48e-01 84.3% 78.0%
3678591 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.69 58.0 5.64e-01 91.6% 87.8%
3990202 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 50.0 4.56e-01 77.1% 91.8%
3669917 243.1.1.50 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.68 60.0 4.31e-01 100.0% 74.8%
3683328 243.1.1.50 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.68 59.0 4.66e-01 100.0% 90.8%
6689 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.66 53.0 4.62e-01 86.7% 59.5%
4009823 5084.5.1.19 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › AsmA 0.65 57.0 3.76e-01 96.4% 54.9%
3468093 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.64 51.0 4.94e-01 90.4% 78.6%
4582509 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.64 45.0 3.21e-01 73.5% 53.9%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.64 51.0 4.04e-01 91.6% 41.7%
3197622 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.63 43.0 4.03e-01 71.1% 62.9%
3974591 7026.1.1.21 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › YhdP 0.63 57.0 3.89e-01 100.0% 35.3%
5048849 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.63 45.0 3.60e-01 73.5% 97.4%
4883419 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.63 50.0 3.40e-01 89.2% 25.8%
3593382 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 49.0 3.20e-01 89.2% 28.9%
3720297 222.1.1.20 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.62 45.0 3.61e-01 75.9% 99.4%
3375447 274.1.1.46 a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.61 47.0 4.39e-01 83.1% 97.1%
3486144 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 46.0 3.10e-01 79.5% 41.9%
3263153 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.61 43.0 3.43e-01 72.3% 91.9%
None 0.60 46.0 3.07e-01 80.7% 39.4%
5027302 3124.1.1.0 beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain 0.60 31.0 3.73e-01 91.6% 80.0%
3476730 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 46.0 3.11e-01 83.1% 39.7%
3579433 222.1.1.20 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.59 42.0 3.42e-01 74.7% 96.9%
3595969 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 53.0 4.69e-01 96.4% 93.9%
3279685 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.59 44.0 3.31e-01 78.3% 75.5%
3634517 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.59 49.0 3.07e-01 91.6% 25.4%
3237854 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 52.0 4.69e-01 100.0% 70.4%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.58 48.0 4.51e-01 95.2% 89.5%
3250601 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.57 48.0 3.29e-01 91.6% 45.2%
3581366 74.1.1.0 beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.57 47.0 2.96e-01 92.8% 16.6%
4947872 3124.1.1.2 beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › UBA_HYPK 0.56 29.0 3.22e-01 91.6% 60.0%
3663192 868.1.1.11 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7903 0.56 40.0 3.01e-01 74.7% 69.3%
3724654 206.1.1.82 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 0.56 44.0 3.09e-01 98.8% 25.3%
4342757 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.56 42.0 3.40e-01 80.7% 98.8%
4063720 868.1.1.2 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase 0.55 40.0 2.88e-01 77.1% 76.9%
4656132 3124.1.1.1 beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.55 29.0 3.25e-01 90.4% 63.1%
1308671 222.1.1.20 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.55 42.0 3.57e-01 80.7% 59.5%
3931298 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 49.0 4.27e-01 100.0% 92.0%
3577955 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 45.0 3.15e-01 90.4% 94.9%
3960870 222.1.1.9 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.54 40.0 3.29e-01 78.3% 90.6%
3487450 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 48.0 4.04e-01 100.0% 57.9%
5036880 330.1.1.35 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.54 40.0 4.25e-01 81.9% 98.6%
3620798 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.61e-01 74.7% 83.0%
4874411 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.54 38.0 3.15e-01 74.7% 98.1%
3402087 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 43.0 3.46e-01 90.4% 80.0%
5038819 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 41.0 2.99e-01 86.7% 78.6%
3164281 5069.1.1.92 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CcmF_C 0.52 43.0 4.11e-01 94.0% 95.0%
3230977 4099.1.1.48 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Rgr-1_C 0.52 47.0 4.04e-01 100.0% 70.0%
4376559 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 38.0 3.20e-01 80.7% 93.7%
3829563 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.51 45.0 3.64e-01 98.8% 61.2%
5071621 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 39.0 2.85e-01 84.3% 78.4%
2770992 74.1.1.2 beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › TFIIA 0.51 34.0 3.92e-01 72.3% 96.7%
5082048 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.51 45.0 3.44e-01 98.8% 93.7%