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OP558001.1__WJJ58547.1__NDO71_orf181__00181

Bact-Vir

OP558001.1__WJJ58547.1__NDO71_orf181__00181

Identity

Accession:
OP558001 ↗
Kingdom:
phage

Quality

61.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mydovirus› Klebsiella_phage_vB_KpnM_NDO71

TaxID: 3041490

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-140
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.63 39.0 4.31e-01 92.6% 79.6%
4bluB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 52.0 4.00e-01 95.1% 40.2%
6foqA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.60 47.0 3.95e-01 83.6% 80.5%
2oo3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 49.0 3.82e-01 95.9% 40.8%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 32.0 3.49e-01 78.7% 63.6%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.59 36.0 3.82e-01 91.8% 68.2%
3popA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.59 46.0 3.65e-01 83.6% 71.0%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.57 45.0 3.61e-01 84.4% 71.0%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.55 42.0 3.81e-01 80.3% 73.5%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.54 42.0 3.66e-01 83.6% 81.6%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.53 42.0 3.63e-01 83.6% 79.1%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.52 40.0 3.85e-01 81.1% 80.4%
1d5yB03 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.52 40.0 3.66e-01 82.0% 83.9%
4ud8A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.52 41.0 3.57e-01 83.6% 81.0%
1przA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.52 41.0 3.53e-01 84.4% 76.9%
4nwbA01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.52 45.0 4.44e-01 95.1% 88.6%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 34.0 3.80e-01 70.5% 87.4%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.50 36.0 3.03e-01 75.4% 85.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4400469 101.1.2.841 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27221 0.62 55.0 5.07e-01 95.9% 86.1%
3277124 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.61 48.0 3.76e-01 83.6% 68.3%
3808565 223.1.1.79 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_NLP 0.61 43.0 3.65e-01 73.0% 70.5%
3409626 4114.1.1.2 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.61 37.0 3.95e-01 88.5% 68.2%
3192549 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.61 49.0 5.25e-01 90.2% 100.0%
4469841 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.61 34.0 3.78e-01 86.1% 68.4%
3638657 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.61 48.0 3.77e-01 84.4% 65.0%
4671158 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.61 48.0 3.72e-01 84.4% 66.3%
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.60 34.0 4.40e-01 78.7% 97.1%
4959045 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.60 46.0 4.33e-01 80.3% 82.0%
4013188 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.60 48.0 3.77e-01 84.4% 68.2%
3202539 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.60 48.0 3.71e-01 84.4% 65.7%
5002609 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 38.0 4.22e-01 93.4% 82.1%
3791663 304.4.1.52 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF7153 0.60 46.0 3.75e-01 82.0% 99.1%
9418 2003.1.5.37 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RsmJ 0.59 49.0 3.82e-01 95.9% 40.8%
3947798 304.8.1.70 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA 0.59 45.0 3.47e-01 81.1% 68.9%
4170426 304.8.1.70 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA 0.59 46.0 3.54e-01 84.4% 63.2%
3409700 4114.1.1.2 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.58 38.0 3.89e-01 80.3% 68.7%
4173640 304.55.1.27 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Phage_GPA 0.58 44.0 3.47e-01 81.1% 85.8%
4511949 304.48.1.74 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA 0.58 44.0 3.61e-01 81.1% 79.6%
4015784 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.58 45.0 3.56e-01 83.6% 65.8%
3689642 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.58 51.0 4.05e-01 98.4% 67.5%
4433786 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.58 39.0 4.51e-01 83.6% 98.8%
3186912 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.58 50.0 3.90e-01 98.4% 71.9%
4622719 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.57 45.0 3.66e-01 84.4% 72.7%
3224625 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.57 33.0 3.92e-01 95.1% 89.3%
3394311 4114.1.1.2 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.57 37.0 3.91e-01 80.3% 72.7%
4051078 304.4.1.71 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF4937 0.57 41.0 4.27e-01 76.2% 100.0%
4011130 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.56 44.0 3.49e-01 83.6% 67.1%
151337 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.56 43.0 3.04e-01 82.8% 59.9%
3996758 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 47.0 4.57e-01 91.8% 87.4%
3283902 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.55 44.0 3.40e-01 84.4% 69.3%
3744424 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.55 46.0 3.87e-01 92.6% 64.2%
3172798 246.3.1.10 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos_PGAP2IP 0.55 44.0 3.36e-01 85.2% 48.2%
3625453 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 47.0 4.26e-01 94.3% 95.2%
3495414 312.1.1.16 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_1 0.53 46.0 3.91e-01 98.4% 67.0%
5050593 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.53 42.0 3.44e-01 85.2% 64.8%
3341723 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.52 46.0 3.76e-01 98.4% 61.7%
4945049 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 34.0 3.83e-01 85.2% 85.3%
4011319 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.52 45.0 3.65e-01 98.4% 59.6%
3406669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 4.07e-01 91.0% 95.0%
3388854 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.51 45.0 3.58e-01 98.4% 54.1%
3741311 304.44.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.51 38.0 3.83e-01 91.0% 78.3%
3733772 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.51 44.0 3.58e-01 98.4% 59.2%
3789211 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.51 34.0 3.73e-01 80.3% 83.0%
3935133 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.51 44.0 3.66e-01 98.4% 62.2%
4305590 4114.1.1.1 ↗ a+b two layers › PHP14-like › PHP14-like › PHP14-like › PP_kinase 0.50 41.0 3.56e-01 91.0% 79.0%
3256773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.63e-01 82.0% 74.0%