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OP558003.1__WJJ58691.1__MDA2066_orf010__00010

Bact-Vir

OP558003.1__WJJ58691.1__MDA2066_orf010__00010

Identity

Accession:
OP558003 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-115
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.80 57.0 5.25e-01 75.0% 63.4%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 54.0 4.80e-01 75.0% 51.8%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 54.0 4.60e-01 75.0% 46.1%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.73 54.0 4.42e-01 78.6% 98.0%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.73 61.0 4.96e-01 94.6% 80.6%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 58.0 4.16e-01 91.1% 59.0%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.70 53.0 4.15e-01 82.1% 76.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 49.0 3.87e-01 78.6% 43.3%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 52.0 3.94e-01 83.9% 86.1%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.67 49.0 4.32e-01 78.6% 85.4%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.65 50.0 4.01e-01 83.9% 53.6%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.65 57.0 3.79e-01 100.0% 51.9%
1h4iA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.65 47.0 2.73e-01 80.4% 20.5%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.65 50.0 3.98e-01 85.7% 73.5%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 4.08e-01 85.7% 70.1%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 51.0 4.08e-01 89.3% 66.4%
3nqnA00 3.30.530.70 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 0.64 55.0 4.08e-01 100.0% 51.0%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 47.0 3.77e-01 80.4% 58.8%
3actA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.63 47.0 3.03e-01 82.1% 88.7%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.63 50.0 3.87e-01 96.4% 62.3%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 50.0 3.92e-01 87.5% 88.2%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 3.41e-01 83.9% 66.9%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 3.43e-01 83.9% 60.6%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.62 50.0 3.67e-01 89.3% 79.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 53.0 4.36e-01 100.0% 94.4%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 42.0 3.66e-01 73.2% 73.3%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.61 44.0 4.05e-01 78.6% 79.7%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 49.0 3.65e-01 98.2% 52.4%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 47.0 3.67e-01 87.5% 79.0%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 43.0 3.50e-01 80.4% 97.4%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.79e-01 98.2% 71.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 44.0 2.89e-01 82.1% 45.4%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 40.0 3.44e-01 75.0% 67.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.57 39.0 2.84e-01 73.2% 35.4%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 3.25e-01 73.2% 76.0%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 38.0 3.05e-01 71.4% 48.7%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 40.0 3.45e-01 82.1% 74.0%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.55 45.0 3.96e-01 92.9% 77.6%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.18e-01 100.0% 70.9%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 2.95e-01 100.0% 78.6%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.05e-01 100.0% 46.7%
1yuaA01 3.30.65.10 Alpha Beta › 2-Layer Sandwich › Bacterial Topoisomerase I; domain 1 › Bacterial Topoisomerase I, domain 1 0.53 37.0 3.63e-01 76.8% 73.4%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.38e-01 87.5% 42.8%
3bywC00 2.60.120.610 Mainly Beta › Sandwich › Jelly Rolls › arabinofuranosyltransferase like domain 0.51 42.0 3.18e-01 98.2% 50.0%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029920 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.82 58.0 5.58e-01 75.0% 66.2%
5002624 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.82 60.0 5.51e-01 76.8% 62.9%
5033243 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.81 60.0 5.26e-01 78.6% 67.5%
4948406 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.80 55.0 5.36e-01 73.2% 68.3%
4929701 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.80 56.0 5.55e-01 76.8% 70.0%
4967355 4100.1.1.3 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.79 56.0 5.32e-01 75.0% 64.6%
4289599 4100.1.1.5 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.78 55.0 5.15e-01 75.0% 61.4%
3224579 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 58.0 3.54e-01 80.4% 19.4%
3699834 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.77 59.0 4.51e-01 82.1% 60.0%
3481690 241.10.1.1 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.76 58.0 5.12e-01 96.4% 56.0%
3242479 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.75 55.0 3.45e-01 78.6% 22.5%
4119222 375.1.1.135 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev 0.73 53.0 5.50e-01 76.8% 100.0%
5046585 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.72 53.0 5.01e-01 76.8% 89.2%
3220737 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.71 51.0 3.24e-01 76.8% 20.1%
3936589 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.71 58.0 3.44e-01 87.5% 37.6%
5032759 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.71 57.0 5.02e-01 89.3% 75.0%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.71 52.0 4.10e-01 78.6% 41.7%
3595376 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 53.0 3.79e-01 80.4% 38.7%
4030668 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.69 51.0 4.92e-01 100.0% 70.8%
3930399 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.69 54.0 4.47e-01 85.7% 79.8%
3465613 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.69 54.0 3.32e-01 85.7% 85.9%
3219284 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.68 54.0 3.47e-01 87.5% 25.3%
3219544 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 53.0 3.36e-01 87.5% 20.7%
2552758 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.68 49.0 3.73e-01 78.6% 40.9%
4028372 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.67 56.0 5.15e-01 100.0% 70.7%
3927945 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 49.0 3.91e-01 80.4% 56.5%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 52.0 3.36e-01 85.7% 22.0%
4073461 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.66 55.0 3.86e-01 96.4% 36.3%
4453958 274.1.1.23 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF5374 0.66 48.0 4.69e-01 76.8% 86.7%
4031750 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.65 48.0 4.05e-01 80.4% 67.7%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 44.0 2.90e-01 71.4% 25.9%
3212468 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.65 55.0 4.67e-01 100.0% 92.0%
3214923 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 51.0 3.52e-01 85.7% 29.7%
3212555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.65 53.0 4.07e-01 91.1% 43.1%
3235531 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.65 50.0 3.34e-01 87.5% 26.2%
3420257 5.1.2.55 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_3 0.65 54.0 3.46e-01 92.9% 72.1%
3236787 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.64 52.0 4.00e-01 91.1% 42.3%
3228574 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 49.0 3.21e-01 83.9% 20.5%
3164898 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 51.0 4.30e-01 89.3% 82.1%
3244243 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 50.0 3.52e-01 91.1% 28.2%
3228484 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 50.0 3.36e-01 94.6% 22.0%
3578128 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 45.0 4.62e-01 82.1% 100.0%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 49.0 3.23e-01 91.1% 22.0%
4076629 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 44.0 2.88e-01 78.6% 23.6%
3215907 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 50.0 3.28e-01 96.4% 24.4%
3231448 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 44.0 3.20e-01 78.6% 39.4%
3227136 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 50.0 3.44e-01 94.6% 29.0%
3242274 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.60 44.0 4.01e-01 78.6% 76.0%
3260781 241.10.1.1 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.60 46.0 4.34e-01 100.0% 68.6%
3843072 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.60 44.0 2.85e-01 78.6% 24.2%
3247669 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 49.0 3.24e-01 94.6% 22.8%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 49.0 3.24e-01 94.6% 23.9%
3225057 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 48.0 3.44e-01 92.9% 30.8%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 47.0 3.30e-01 92.9% 28.1%
4891197 3794.1.1.7 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › Biotin_lipoyl 0.59 47.0 3.88e-01 94.6% 58.4%
3649484 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.58 44.0 3.29e-01 85.7% 73.8%
4938243 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 44.0 4.31e-01 82.1% 85.0%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 46.0 3.10e-01 92.9% 22.4%
3536576 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.58 46.0 4.16e-01 94.6% 74.1%
3828973 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.57 43.0 4.15e-01 87.5% 73.8%
4972588 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.56 46.0 2.92e-01 92.9% 37.8%
3963978 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.56 39.0 3.48e-01 78.6% 49.5%
3675633 902.1.1.0 few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen 0.56 37.0 3.95e-01 73.2% 100.0%
3788021 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 38.0 3.54e-01 73.2% 74.7%
3573828 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 39.0 3.32e-01 75.0% 90.0%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 39.0 3.85e-01 75.0% 83.3%
3517889 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.54 40.0 3.37e-01 83.9% 72.1%
4935681 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.71e-01 75.0% 78.2%
5067008 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 40.0 2.80e-01 87.5% 61.0%
4116769 375.1.1.38 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Topo_Zn_Ribbon 0.51 36.0 3.01e-01 76.8% 80.9%
D2 medium residues 1-59
PDB
Domain cluster: representative