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OP583595.1__WAX24242.1__S3_00037__00037

Bact-Vir

OP583595.1__WAX24242.1__S3_00037__00037

Identity

Accession:
OP583595 ↗
Kingdom:
phage

Quality

55.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Pradovirus› Xanthomonas_phage_S3

TaxID: 3003373

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-132
PDB
Domain cluster: rep: MZ326863.1__QYW02339.1__CPT_Paku_045__00045__D5-122
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 30.9 2.50e-07 97.6% 92.3%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.86 82.0 7.42e-01 100.0% 84.8%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.85 81.0 7.08e-01 100.0% 80.9%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 79.0 7.00e-01 100.0% 94.6%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 78.0 6.69e-01 100.0% 86.9%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 78.0 7.01e-01 99.2% 86.3%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 76.0 6.96e-01 100.0% 85.6%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 75.0 6.47e-01 100.0% 96.7%
153lA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 74.0 6.35e-01 100.0% 68.6%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.75 70.0 6.38e-01 100.0% 88.7%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 56.0 5.75e-01 100.0% 89.8%
4kt3A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 60.0 5.75e-01 100.0% 80.9%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 57.0 5.61e-01 100.0% 83.1%
1am7A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 58.0 5.37e-01 95.1% 91.6%
1q9cA01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.60 48.0 4.55e-01 85.4% 98.0%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.59 52.0 4.73e-01 95.9% 90.9%
1xg7A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.56 39.0 3.72e-01 100.0% 60.8%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.54 45.0 4.28e-01 92.7% 79.5%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 30.0 3.26e-01 82.9% 66.3%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 33.0 3.77e-01 99.2% 90.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964630 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.90 75.0 6.71e-01 100.0% 64.6%
3945171 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.87 81.0 7.56e-01 100.0% 82.1%
3965879 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.86 82.0 7.31e-01 100.0% 81.2%
3941811 235.1.1.32 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 0.85 81.0 7.12e-01 100.0% 82.4%
4995668 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 72.0 7.26e-01 90.2% 95.9%
2393514 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.82 78.0 6.57e-01 100.0% 83.7%
3839391 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.82 78.0 7.11e-01 100.0% 81.9%
3969917 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 77.0 6.36e-01 100.0% 67.5%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 77.0 6.74e-01 100.0% 85.9%
3839661 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.81 77.0 6.75e-01 100.0% 82.4%
4864324 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.80 62.0 6.00e-01 79.7% 81.6%
3385979 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 75.0 6.35e-01 100.0% 71.6%
3947025 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.79 74.0 6.58e-01 100.0% 85.7%
3942480 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.76 71.0 6.52e-01 100.0% 95.5%
3205219 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.75 72.0 6.30e-01 100.0% 74.1%
3966371 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.74 70.0 5.11e-01 100.0% 73.0%
2323880 235.1.1.18 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Muramidase 0.71 65.0 5.66e-01 100.0% 93.6%
4680920 235.1.1.10 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase 0.67 63.0 5.83e-01 100.0% 86.9%
3728943 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.65 58.0 5.17e-01 100.0% 69.4%
3877052 235.1.1.31 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 0.59 54.0 4.77e-01 100.0% 70.0%
D2 high residues 478-524
PDB
D3 medium residues 574-686
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jixB00 3.30.2010.10 Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" 0.64 41.0 4.24e-01 94.7% 69.2%
3dteA01 1.10.10.2910 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 38.0 3.78e-01 77.0% 58.1%
1i1qB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 41.0 3.52e-01 81.4% 98.9%
3f5dA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 39.0 3.29e-01 77.0% 85.0%
1eb6A00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.52 44.0 3.84e-01 92.0% 74.0%
1k9fA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.52 41.0 4.00e-01 84.1% 85.6%
2kx7A00 3.40.50.11620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase RcsD, RcsD-ABL domain 0.52 40.0 4.08e-01 88.5% 82.9%
7b7tA03 3.40.50.2030 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 40.0 3.23e-01 82.3% 84.5%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 33.0 3.48e-01 82.3% 73.0%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 3.17e-01 87.6% 73.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983979 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.70 46.0 4.66e-01 96.5% 66.1%
3983198 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.64 46.0 5.21e-01 95.6% 100.0%
4261757 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.62 51.0 3.89e-01 86.7% 46.8%
4927951 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.58 51.0 4.21e-01 93.8% 81.5%
3679089 2498.1.1.51 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DA1-like 0.56 51.0 3.90e-01 100.0% 46.1%
4020944 2498.1.1.12 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M4,Peptidase_M4_C 0.55 45.0 3.13e-01 87.6% 32.6%
3285343 2003.1.3.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO, Pyr_redox_2 0.54 41.0 3.36e-01 82.3% 90.1%
4412026 2498.1.1.46 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Aspzincin_M35 0.53 46.0 3.97e-01 93.8% 73.1%
3596583 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 44.0 2.99e-01 91.2% 86.2%
4955694 2498.2.1.0 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain 0.53 45.0 4.37e-01 92.0% 91.2%
4940045 2498.2.1.6 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C 0.52 41.0 3.99e-01 84.1% 84.8%
4944303 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.51 41.0 4.03e-01 85.8% 79.2%
D4 medium residues 904-1023
PDB