←Back to structures
OP588919.1__UZZ64503.1__X__00001
Bact-VirOP588919.1__UZZ64503.1__X__00001
Identity
- Accession:
- OP588919 ↗
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-99
Domain cluster:
rep: S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00045__D438-519
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.78 | 69.0 | 4.50e-01 | 100.0% | 42.0% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.73 | 63.0 | 4.52e-01 | 100.0% | 42.4% |
| 3vskA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.70 | 48.0 | 3.67e-01 | 71.7% | 89.5% |
| 2nn6E00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.69 | 50.0 | 3.23e-01 | 76.7% | 40.0% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.69 | 54.0 | 4.86e-01 | 83.3% | 63.7% |
| 3sluA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 58.0 | 4.39e-01 | 91.7% | 70.8% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.68 | 55.0 | 4.15e-01 | 86.7% | 42.0% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.67 | 46.0 | 4.56e-01 | 71.7% | 77.8% |
| 3gmvX00 | 3.10.450.730 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain | 0.67 | 60.0 | 4.38e-01 | 100.0% | 62.2% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.66 | 42.0 | 3.48e-01 | 75.0% | 33.9% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.66 | 55.0 | 4.48e-01 | 93.3% | 58.6% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.66 | 54.0 | 4.11e-01 | 91.7% | 71.9% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 48.0 | 3.54e-01 | 100.0% | 29.4% |
| 2iecD00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.64 | 53.0 | 4.32e-01 | 93.3% | 64.1% |
| 1sznA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.64 | 48.0 | 4.00e-01 | 80.0% | 92.2% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 57.0 | 4.57e-01 | 100.0% | 89.5% |
| 1n7vA01 | 2.105.10.10 | Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller | 0.63 | 52.0 | 3.90e-01 | 100.0% | 72.3% |
| 7dpyB01 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.63 | 50.0 | 4.52e-01 | 93.3% | 62.7% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.63 | 53.0 | 3.89e-01 | 100.0% | 33.9% |
| 3i9v700 | 3.30.920.80 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 | 0.62 | 54.0 | 4.27e-01 | 98.3% | 59.1% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.62 | 45.0 | 3.20e-01 | 78.3% | 45.1% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.61 | 49.0 | 3.86e-01 | 88.3% | 54.7% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.59 | 49.0 | 3.24e-01 | 91.7% | 23.7% |
| 2a1vA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.59 | 47.0 | 3.62e-01 | 88.3% | 51.4% |
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.59 | 42.0 | 4.10e-01 | 93.3% | 67.6% |
| 2fkiA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.58 | 47.0 | 3.75e-01 | 88.3% | 55.9% |
| 2wb8A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 39.0 | 2.90e-01 | 70.0% | 75.2% |
| 2w18A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 49.0 | 3.19e-01 | 98.3% | 27.5% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 49.0 | 3.86e-01 | 98.3% | 44.0% |
| 1k82B01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.57 | 48.0 | 3.77e-01 | 93.3% | 85.0% |
| 3w0fA01 | 3.20.190.10 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal | 0.57 | 46.0 | 3.66e-01 | 88.3% | 86.6% |
| 1ry9A00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.57 | 47.0 | 3.68e-01 | 93.3% | 62.4% |
| 2ablA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 44.0 | 3.87e-01 | 93.3% | 91.8% |
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.53 | 43.0 | 4.09e-01 | 88.3% | 90.1% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 44.0 | 2.83e-01 | 100.0% | 37.0% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.53 | 44.0 | 3.62e-01 | 100.0% | 50.0% |
| 2af5A01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.53 | 38.0 | 3.92e-01 | 78.3% | 100.0% |
| 4perB00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.52 | 45.0 | 3.75e-01 | 98.3% | 82.6% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.52 | 45.0 | 3.98e-01 | 98.3% | 67.0% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 3.07e-01 | 78.3% | 47.5% |
| 1ro5A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 44.0 | 3.20e-01 | 100.0% | 88.2% |
| 2uurA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 42.0 | 3.03e-01 | 100.0% | 52.4% |
| 6ryvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.38e-01 | 81.7% | 66.2% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.50 | 41.0 | 3.04e-01 | 95.0% | 54.0% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4570038 | 3735.1.1.14 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell | 0.92 | 87.0 | 4.67e-01 | 100.0% | 31.8% |
| 4230707 | 79.1.1.32 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › RHS_repeat, TEN_YD-shell | 0.89 | 82.0 | 4.95e-01 | 100.0% | 17.4% |
| None | — | 0.89 | 82.0 | 4.33e-01 | 100.0% | 4.6% | |
| 4210618 | 3735.1.1.12 ↗ | beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › RHS_repeat, DUF6531, TEN_YD-shell | 0.86 | 80.0 | 4.62e-01 | 100.0% | 13.4% |
| 185765 | 5084.5.1.13 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF4595 | 0.78 | 69.0 | 4.50e-01 | 100.0% | 42.0% |
| 3965839 | 77.1.1.6 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 | 0.73 | 63.0 | 4.70e-01 | 100.0% | 43.9% |
| 3889564 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.70 | 48.0 | 3.46e-01 | 78.3% | 26.9% |
| 4951171 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.70 | 48.0 | 4.56e-01 | 81.7% | 61.4% |
| 3863197 | 77.1.1.2 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 | 0.69 | 59.0 | 4.31e-01 | 100.0% | 35.6% |
| 6667 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.69 | 54.0 | 4.90e-01 | 83.3% | 65.4% |
| 3755983 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.68 | 47.0 | 4.04e-01 | 71.7% | 51.6% |
| 1606365 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.68 | 57.0 | 4.68e-01 | 91.7% | 91.4% |
| 3968453 | 3953.1.1.2 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 | 0.67 | 56.0 | 4.47e-01 | 91.7% | 82.5% |
| 4104010 | 243.1.1.23 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3887 | 0.67 | 45.0 | 3.86e-01 | 70.0% | 48.4% |
| 2491359 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.66 | 56.0 | 4.35e-01 | 96.7% | 65.4% |
| 4666231 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.64 | 56.0 | 4.08e-01 | 100.0% | 55.4% |
| 3206625 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.63 | 43.0 | 4.72e-01 | 71.7% | 95.6% |
| 3783819 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.63 | 53.0 | 3.29e-01 | 96.7% | 21.6% |
| 5068734 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.63 | 42.0 | 3.25e-01 | 70.0% | 34.3% |
| 3305495 | 331.10.1.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox | 0.62 | 52.0 | 3.25e-01 | 93.3% | 18.3% |
| 3822070 | 331.10.2.8 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SAM_decarbox | 0.62 | 51.0 | 4.10e-01 | 90.0% | 51.3% |
| 4946203 | 3794.1.1.7 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › Biotin_lipoyl | 0.61 | 44.0 | 4.07e-01 | 80.0% | 60.0% |
| 4031135 | 6043.1.1.3 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N | 0.61 | 41.0 | 3.64e-01 | 70.0% | 54.1% |
| 3595247 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.60 | 55.0 | 4.21e-01 | 100.0% | 48.5% |
| 3200199 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.60 | 51.0 | 2.92e-01 | 96.7% | 21.0% |
| 1102013 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.60 | 42.0 | 3.01e-01 | 76.7% | 43.3% |
| 3584223 | 5.1.5.64 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 | 0.59 | 45.0 | 2.70e-01 | 85.0% | 34.8% |
| 3191953 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.59 | 51.0 | 3.64e-01 | 98.3% | 37.8% |
| 5074509 | 241.11.1.7 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF3788 | 0.59 | 52.0 | 4.02e-01 | 100.0% | 79.3% |
| 4988150 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.58 | 48.0 | 4.03e-01 | 93.3% | 62.9% |
| 3238362 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 47.0 | 3.08e-01 | 100.0% | 27.7% |
| 5072132 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.57 | 44.0 | 4.03e-01 | 86.7% | 61.3% |
| 4340836 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 44.0 | 4.23e-01 | 83.3% | 75.7% |
| 3240119 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.57 | 46.0 | 3.82e-01 | 88.3% | 98.1% |
| 5003245 | 243.8.1.0 ↗ | a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein | 0.56 | 44.0 | 4.21e-01 | 86.7% | 82.9% |
| 3583928 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.56 | 46.0 | 3.88e-01 | 93.3% | 86.7% |
| 3518510 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.55 | 44.0 | 3.80e-01 | 93.3% | 90.5% |
| 5009473 | 243.3.1.77 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Ta0938 | 0.51 | 44.0 | 3.74e-01 | 98.3% | 99.0% |