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OP588919.1__UZZ64538.1__X__00036

Bact-Vir

OP588919.1__UZZ64538.1__X__00036

Identity

Accession:
OP588919 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-97
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hheA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.81 64.0 6.00e-01 100.0% 70.5%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.80 60.0 4.28e-01 100.0% 28.6%
2f8mA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.76 57.0 5.39e-01 100.0% 67.1%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 60.0 5.17e-01 100.0% 58.3%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.69 61.0 4.62e-01 100.0% 43.5%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 51.0 4.38e-01 100.0% 50.0%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 60.0 5.03e-01 100.0% 65.8%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 49.0 4.30e-01 100.0% 52.0%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 4.32e-01 100.0% 52.4%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 51.0 4.51e-01 100.0% 56.3%
2zogA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 54.0 3.91e-01 90.8% 37.9%
1rjjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 49.0 4.18e-01 100.0% 49.5%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 41.0 3.66e-01 92.3% 43.4%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 51.0 4.43e-01 100.0% 56.6%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 51.0 4.47e-01 100.0% 58.3%
1d2gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 50.0 3.57e-01 100.0% 29.8%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.63 52.0 4.48e-01 100.0% 56.6%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 44.0 3.86e-01 87.7% 48.5%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 53.0 4.32e-01 100.0% 64.1%
1lk5A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 43.0 4.12e-01 100.0% 63.3%
2q14A02 1.20.1250.30 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 47.0 3.52e-01 84.6% 89.8%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 51.0 4.20e-01 100.0% 55.5%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 52.0 4.30e-01 100.0% 59.3%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 51.0 4.31e-01 100.0% 62.3%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 51.0 4.26e-01 100.0% 60.3%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.19e-01 100.0% 62.6%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 44.0 2.91e-01 100.0% 18.9%
4m5dA05 3.30.70.3030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 3.96e-01 100.0% 57.1%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 47.0 3.42e-01 100.0% 37.7%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.56 47.0 3.89e-01 100.0% 50.8%
1vkvA01 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 46.0 3.53e-01 100.0% 41.1%
5huoE01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.55 41.0 3.21e-01 78.5% 41.0%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 47.0 3.57e-01 100.0% 51.2%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 46.0 3.01e-01 93.8% 93.3%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 47.0 3.01e-01 100.0% 19.8%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.54 40.0 3.54e-01 100.0% 51.1%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 2.89e-01 86.2% 57.3%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.53 41.0 2.84e-01 100.0% 24.8%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.53 36.0 3.92e-01 100.0% 86.8%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.28e-01 92.3% 87.4%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 42.0 3.46e-01 86.2% 60.5%
1t0tV02 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.52 43.0 3.61e-01 100.0% 54.1%
4lbhA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.51 39.0 3.51e-01 100.0% 58.5%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.51 41.0 3.68e-01 100.0% 61.0%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 38.0 3.32e-01 80.0% 83.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932448 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.80 60.0 5.34e-01 100.0% 57.8%
3736793 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.76 54.0 3.88e-01 90.8% 27.4%
3729608 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.71 63.0 5.09e-01 100.0% 52.8%
3679417 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.70 63.0 4.99e-01 100.0% 57.7%
2093009 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.69 58.0 5.18e-01 100.0% 64.6%
4671096 304.4.1.54 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.69 59.0 4.68e-01 100.0% 47.7%
3736965 812.1.1.2 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › AtuA 0.68 61.0 5.98e-01 100.0% 92.9%
3597235 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 61.0 4.38e-01 100.0% 56.5%
3730042 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.67 54.0 4.48e-01 100.0% 49.6%
3762458 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 61.0 5.22e-01 100.0% 73.0%
4451470 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.65 46.0 3.81e-01 100.0% 38.5%
3569962 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.65 46.0 4.19e-01 100.0% 52.6%
3555669 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.65 48.0 3.96e-01 100.0% 43.3%
3336774 310.3.1.13 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27677 0.65 51.0 4.43e-01 100.0% 56.0%
3440141 3012.1.1.11 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27677 0.65 51.0 4.48e-01 100.0% 57.0%
3720308 312.1.1.7 a+b three layers › HIT-like › HIT-related › HIT-related › ATP_transf 0.65 50.0 4.06e-01 100.0% 44.0%
3477595 304.20.1.1 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind 0.65 55.0 4.23e-01 100.0% 42.5%
3522520 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.64 47.0 4.46e-01 100.0% 65.0%
5202 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.64 42.0 3.69e-01 90.8% 44.0%
4515208 304.24.1.7 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V_ATPase_I 0.64 45.0 3.86e-01 100.0% 43.5%
3350776 304.5.1.23 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V_ATPase_I 0.64 45.0 4.29e-01 100.0% 62.5%
3698276 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.64 53.0 4.40e-01 100.0% 51.7%
4859785 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.64 51.0 4.46e-01 100.0% 56.6%
3723946 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.62 55.0 3.89e-01 100.0% 49.0%
3694783 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.62 54.0 4.04e-01 100.0% 45.9%
3929632 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.61 43.0 3.76e-01 100.0% 46.7%
3184391 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.61 43.0 3.76e-01 100.0% 45.5%
1124197 304.141.1.1 a+b two layers › Alpha-beta plaits › Avirulence Effector AvrLm4-7 › Avirulence Effector AvrLm4-7 › AvrLm4-7 0.61 53.0 4.27e-01 100.0% 55.4%
3540649 11.1.1.789 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA1549 0.60 52.0 4.34e-01 100.0% 66.7%
4029363 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.60 52.0 3.99e-01 100.0% 43.1%
166595 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.60 49.0 4.29e-01 100.0% 59.4%
4797685 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.60 42.0 3.62e-01 98.5% 43.4%
3875020 312.1.1.19 a+b three layers › HIT-like › HIT-related › HIT-related › PF26216 0.59 50.0 3.87e-01 100.0% 40.6%
3725630 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 45.0 4.23e-01 100.0% 67.5%
4221224 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.59 52.0 4.39e-01 100.0% 65.5%
4431984 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.59 47.0 4.48e-01 100.0% 75.0%
3736643 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 48.0 4.14e-01 100.0% 55.5%
3784198 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.59 50.0 4.38e-01 100.0% 67.6%
3978570 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.58 45.0 2.75e-01 100.0% 12.7%
3405715 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.58 52.0 3.41e-01 100.0% 29.8%
4387576 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.58 44.0 3.82e-01 100.0% 52.4%
2901051 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.57 43.0 4.03e-01 100.0% 63.6%
4927894 304.48.1.4 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.57 49.0 3.44e-01 100.0% 37.0%
3413150 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.57 48.0 4.30e-01 100.0% 74.0%
1878708 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.56 48.0 4.28e-01 100.0% 73.5%
5079251 312.1.1.5 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_tr_C 0.56 47.0 3.60e-01 100.0% 43.5%
3649644 327.11.2.11 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1_3 0.56 48.0 4.09e-01 100.0% 58.2%
1304888 312.1.1.5 a+b three layers › HIT-like › HIT-related › HIT-related › GalP_UDP_tr_C 0.56 46.0 3.52e-01 100.0% 41.1%
3167302 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.55 49.0 4.35e-01 100.0% 77.9%
3300663 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.55 39.0 3.85e-01 100.0% 71.4%
3269830 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.53 45.0 3.66e-01 100.0% 71.1%
4029891 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.53 42.0 3.87e-01 100.0% 67.1%
2754119 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.53 45.0 2.92e-01 100.0% 79.8%
None 0.52 44.0 2.78e-01 98.5% 72.6%
5066391 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 40.0 3.21e-01 100.0% 40.7%
4828792 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.51 43.0 2.99e-01 100.0% 49.4%