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OP589283.1__UYE93401.1__X__00004
Bact-VirOP589283.1__UYE93401.1__X__00004
Identity
- Accession:
- OP589283 ↗
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-104
Domain cluster:
rep: NC_061421.1__YP_010298754.1__MOC16_gp296__00117__D5-95
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.70 | 51.0 | 4.45e-01 | 77.0% | 70.9% |
| 4iqyB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.62 | 44.0 | 3.41e-01 | 74.0% | 45.2% |
| 4c76A00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.59 | 41.0 | 3.44e-01 | 74.0% | 91.8% |
| 1l5xA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.57 | 42.0 | 3.07e-01 | 77.0% | 55.3% |
| 1ui0A00 | 3.40.470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain | 0.57 | 40.0 | 3.32e-01 | 74.0% | 78.6% |
| 4l63A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.56 | 39.0 | 2.92e-01 | 71.0% | 77.1% |
| 7dd9A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.55 | 41.0 | 3.00e-01 | 79.0% | 50.0% |
| 5kbpA01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.55 | 39.0 | 2.83e-01 | 74.0% | 49.3% |
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 36.0 | 3.21e-01 | 70.0% | 62.0% |
| 3b0xA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 36.0 | 3.62e-01 | 72.0% | 88.6% |
| 3e1tA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 40.0 | 3.02e-01 | 82.0% | 39.8% |
| 2xmoA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 40.0 | 2.84e-01 | 84.0% | 62.8% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 37.0 | 3.20e-01 | 77.0% | 97.0% |
| 5ziyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.50 | 38.0 | 3.08e-01 | 81.0% | 46.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5018208 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 39.0 | 3.80e-01 | 71.0% | 55.6% |
| 3214728 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.63 | 44.0 | 3.02e-01 | 74.0% | 45.2% |
| 5083335 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.61 | 42.0 | 2.93e-01 | 71.0% | 28.7% |
| 3398904 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.61 | 42.0 | 3.42e-01 | 71.0% | 94.4% |
| 3498612 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.58 | 39.0 | 3.26e-01 | 70.0% | 39.3% |
| 10482 | 7527.1.1.1 ↗ | a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE | 0.57 | 42.0 | 3.06e-01 | 77.0% | 55.1% |
| 1549043 | 2007.1.15.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › YfiR › DUF4154 | 0.56 | 39.0 | 3.39e-01 | 71.0% | 56.9% |
| 3966302 | 2007.1.15.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › YfiR | 0.56 | 40.0 | 3.45e-01 | 73.0% | 58.1% |
| 4237583 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.56 | 38.0 | 3.52e-01 | 71.0% | 77.8% |
| 3803299 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.55 | 42.0 | 3.61e-01 | 83.0% | 50.6% |
| 3508823 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.55 | 39.0 | 2.94e-01 | 74.0% | 94.0% |
| 1139525 | 2011.1.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M18 | 0.55 | 34.0 | 3.52e-01 | 100.0% | 66.3% |
| 5052534 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.55 | 39.0 | 2.84e-01 | 74.0% | 84.4% |
| 4527323 | 3957.1.1.1 ↗ | a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › Gon7 | 0.54 | 28.0 | 3.36e-01 | 70.0% | 75.0% |
| 4964535 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.54 | 47.0 | 3.20e-01 | 100.0% | 73.1% |
| 5076439 | 2002.3.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_38N | 0.54 | 39.0 | 2.95e-01 | 77.0% | 63.5% |
| 4017512 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.54 | 39.0 | 2.79e-01 | 83.0% | 25.8% |
| 4957215 | 316.1.1.23 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb | 0.53 | 37.0 | 3.13e-01 | 72.0% | 52.9% |
| 4998808 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.53 | 39.0 | 3.11e-01 | 78.0% | 40.0% |
| None | — | 0.52 | 38.0 | 2.78e-01 | 78.0% | 42.9% | |
| 1396617 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 40.0 | 2.90e-01 | 84.0% | 68.4% |
| 3957910 | 316.1.1.26 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS | 0.51 | 36.0 | 3.42e-01 | 74.0% | 91.7% |
| 4027917 | 2004.1.1.230 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like | 0.50 | 36.0 | 3.13e-01 | 77.0% | 96.4% |
D2
high
residues 107-286
Domain cluster:
rep: term6_stool_scaffold_5_prodigal-single.1__X__X__00135__D127-319
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25614.2 best | PhiKZ_VTX | 61.1 | 1.50e-16 | 98.9% | 57.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fx0A03 | 1.20.150.20 | Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain | 0.72 | 24.0 | 2.86e-01 | 76.7% | 41.9% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.58 | 37.0 | 4.52e-01 | 90.6% | 100.0% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.56 | 33.0 | 4.01e-01 | 70.6% | 90.3% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 28.0 | 3.54e-01 | 75.6% | 83.2% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.52 | 32.0 | 3.81e-01 | 76.7% | 92.1% |
| 7fciA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.52 | 37.0 | 3.23e-01 | 72.8% | 82.1% |
| 3ce9A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 39.0 | 3.86e-01 | 100.0% | 74.7% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 33.0 | 3.97e-01 | 85.6% | 96.7% |
| 7e4gA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 38.0 | 3.75e-01 | 87.8% | 71.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3853197 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.62 | 38.0 | 3.82e-01 | 92.8% | 59.6% |
| 5010255 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.56 | 35.0 | 3.95e-01 | 99.4% | 80.7% |
| 5049810 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.55 | 46.0 | 4.06e-01 | 87.8% | 100.0% |
| 5030702 | 601.7.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 | 0.53 | 29.0 | 3.38e-01 | 88.3% | 74.4% |
| 5060885 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.53 | 46.0 | 3.92e-01 | 94.4% | 100.0% |
| 3970792 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.52 | 30.0 | 3.61e-01 | 75.6% | 84.2% |