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OP589283.1__UYE93414.1__X__00017

Bact-Vir

OP589283.1__UYE93414.1__X__00017

Identity

Accession:
OP589283 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_phage_FishSpeaker

TaxID: 2985553

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: rep: OR413581.1__WNT47914.1__SPLA3_PHROGS00109__00108__D3-59
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 40.0 3.27e-01 82.3% 33.3%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 41.0 3.21e-01 83.9% 30.5%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 38.0 3.14e-01 79.0% 33.9%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 40.0 3.30e-01 83.9% 35.4%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 40.0 3.25e-01 83.9% 35.8%
3fh1A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 39.0 3.06e-01 83.9% 32.0%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 37.0 2.95e-01 82.3% 31.4%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.61 41.0 3.94e-01 100.0% 60.6%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 39.0 3.13e-01 80.6% 35.6%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 39.0 2.96e-01 82.3% 29.3%
1nu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 39.0 2.91e-01 82.3% 29.7%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.11e-01 80.6% 37.6%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 2.85e-01 82.3% 29.9%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 2.96e-01 82.3% 32.6%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 2.83e-01 82.3% 31.9%
1yx0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.56e-01 100.0% 100.0%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 3.40e-01 98.4% 37.7%
7lmaF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.70e-01 83.9% 67.8%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.27e-01 79.0% 94.6%
3qfmA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 41.0 2.73e-01 85.5% 85.7%
3zjyC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 4.12e-01 95.2% 90.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.24e-01 100.0% 41.9%
5ktiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 43.0 3.38e-01 95.2% 53.5%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.10e-01 83.9% 37.5%
3s6fA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.45e-01 100.0% 81.0%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 2.94e-01 82.3% 35.5%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 2.95e-01 77.4% 87.8%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 2.90e-01 82.3% 35.2%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.01e-01 80.6% 90.7%
3rriA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 31.0 2.49e-01 82.3% 28.2%
1wmzA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 41.0 3.24e-01 93.5% 54.3%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.08e-01 83.9% 89.6%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 2.98e-01 80.6% 90.2%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 2.89e-01 82.3% 34.7%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 37.0 3.24e-01 83.9% 99.1%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
169506 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.67 40.0 3.26e-01 82.3% 33.0%
6397 243.1.1.30 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4904 0.67 41.0 3.21e-01 83.9% 30.5%
5033887 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.65 46.0 3.75e-01 91.9% 40.0%
3257116 243.1.1.36 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 0.61 40.0 3.26e-01 82.3% 37.3%
3273514 243.1.1.36 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 0.61 40.0 3.14e-01 83.9% 32.3%
1716100 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 37.0 2.95e-01 82.3% 31.4%
3280267 243.1.1.11 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LEH 0.61 39.0 3.00e-01 82.3% 29.7%
3958160 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 46.0 3.70e-01 100.0% 42.5%
2096144 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 39.0 2.99e-01 82.3% 30.9%
3288868 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 38.0 3.07e-01 82.3% 34.2%
3961916 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.59 39.0 3.10e-01 82.3% 36.5%
4996998 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 36.0 2.94e-01 82.3% 33.3%
3972561 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.59 39.0 2.87e-01 82.3% 27.7%
2388842 243.1.1.11 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LEH 0.58 39.0 2.89e-01 82.3% 27.9%
3744079 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 38.0 2.99e-01 82.3% 33.6%
3275203 221.2.1.1 ↗ a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.58 48.0 4.42e-01 96.8% 83.5%
3721032 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 38.0 2.86e-01 82.3% 28.7%
3278537 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 38.0 2.96e-01 82.3% 34.4%
3947973 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 39.0 3.07e-01 82.3% 36.0%
2452648 221.2.1.1 ↗ a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.56 48.0 4.30e-01 98.4% 78.0%
4962436 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 37.0 2.90e-01 82.3% 33.1%
2388320 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 38.0 2.99e-01 72.6% 84.1%
169776 243.1.1.4 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PHZA_PHZB 0.55 39.0 2.84e-01 82.3% 28.4%
6396 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 36.0 2.83e-01 82.3% 31.9%
3969379 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 39.0 2.89e-01 82.3% 30.7%
3578390 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 3.30e-01 100.0% 85.8%
3287863 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 39.0 3.06e-01 75.8% 88.5%
3343550 243.1.1.53 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › WI12 0.54 46.0 3.55e-01 96.8% 97.2%
3289978 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 45.0 3.45e-01 95.2% 90.3%
3435983 243.1.1.53 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › WI12 0.52 46.0 3.46e-01 100.0% 88.4%
2443846 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 40.0 2.97e-01 83.9% 32.5%
3718124 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 42.0 3.03e-01 88.7% 83.2%
4026251 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.52 38.0 2.73e-01 79.0% 30.0%
3317450 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.26e-01 100.0% 46.4%
4266100 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.51 39.0 2.43e-01 87.1% 13.6%
2095515 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 44.0 3.46e-01 95.2% 97.7%
5041335 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 39.0 2.91e-01 82.3% 37.4%
3286118 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 42.0 3.42e-01 91.9% 95.8%
3282929 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 35.0 2.89e-01 72.6% 87.5%
5076453 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.51 39.0 3.12e-01 82.3% 43.5%
5039587 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.51 39.0 3.00e-01 82.3% 38.5%
4959875 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.51 39.0 2.95e-01 82.3% 35.7%
1549295 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 42.0 3.26e-01 93.5% 53.9%
6367 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.51 38.0 2.90e-01 82.3% 35.2%
4962810 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.50 39.0 2.96e-01 82.3% 37.0%
4974124 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.50 38.0 2.92e-01 82.3% 35.7%
3284639 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 37.0 2.84e-01 79.0% 79.3%
134348 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 37.0 2.98e-01 80.6% 89.5%
137314 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.50 38.0 2.89e-01 82.3% 34.7%
3290999 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.50 39.0 2.92e-01 82.3% 35.2%
D2 high residues 67-132
PDB
Domain cluster: rep: OR413581.1__WNT47914.1__SPLA3_PHROGS00109__00108__D62-125