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OP595602.1__UYE96362.1__X__00095

Bact-Vir

OP595602.1__UYE96362.1__X__00095

Identity

Accession:
OP595602 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.74 50.0 5.19e-01 70.1% 93.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 4.78e-01 74.6% 75.0%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 4.65e-01 79.1% 70.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.01e-01 77.6% 91.7%
3lltA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 53.0 4.76e-01 83.6% 95.7%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 49.0 5.33e-01 77.6% 98.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 47.0 4.57e-01 74.6% 86.7%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 50.0 5.00e-01 82.1% 87.1%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.97e-01 79.1% 93.7%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 45.0 4.06e-01 71.6% 93.3%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 43.0 3.51e-01 71.6% 87.7%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 42.0 3.45e-01 70.1% 84.9%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.35e-01 91.0% 79.6%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.65e-01 79.1% 89.4%
6n3oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 43.0 3.89e-01 73.1% 91.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.68e-01 79.1% 93.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.63e-01 79.1% 93.7%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 42.0 2.59e-01 73.1% 39.6%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.45e-01 71.6% 64.7%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 2.58e-01 74.6% 38.8%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 42.0 3.55e-01 76.1% 95.7%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.34e-01 94.0% 80.2%
1fvuB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.58 42.0 3.52e-01 79.1% 76.0%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.18e-01 76.1% 86.4%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.19e-01 74.6% 62.4%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 38.0 3.51e-01 76.1% 96.9%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 40.0 2.67e-01 80.6% 31.8%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 40.0 3.58e-01 80.6% 78.2%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 37.0 3.45e-01 71.6% 93.3%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.71e-01 82.1% 98.9%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.54 38.0 3.24e-01 76.1% 49.2%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 2.98e-01 100.0% 30.1%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.46e-01 71.6% 80.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 34.0 3.51e-01 79.1% 68.2%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 42.0 3.80e-01 89.6% 84.5%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 38.0 2.51e-01 76.1% 34.5%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 3.58e-01 80.6% 74.2%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.71e-01 80.6% 87.2%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 2.93e-01 71.6% 56.6%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 35.0 3.64e-01 74.6% 77.0%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 43.0 2.87e-01 100.0% 33.3%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.51 37.0 3.66e-01 77.6% 83.1%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 38.0 3.94e-01 80.6% 100.0%
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.51 37.0 3.45e-01 83.6% 77.6%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 37.0 3.02e-01 82.1% 77.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4519674 4.1.1.186 beta barrels › SH3 › SH3 › SH3 › DUF5397 0.79 59.0 6.30e-01 77.6% 98.3%
3394215 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 52.0 4.50e-01 74.6% 60.0%
4306285 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.01e-01 73.1% 81.4%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.71 50.0 4.12e-01 73.1% 54.8%
3570369 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 51.0 4.58e-01 74.6% 64.4%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.23e-01 76.1% 95.4%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.08e-01 76.1% 92.3%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.68 50.0 5.15e-01 77.6% 93.5%
1112010 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.67 47.0 4.57e-01 74.6% 86.7%
5032461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.89e-01 76.1% 96.9%
4138935 4.1.1.241 beta barrels › SH3 › SH3 › SH3 › NifZ 0.67 51.0 4.93e-01 82.1% 100.0%
3814411 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 48.0 4.10e-01 77.6% 59.0%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.48e-01 77.6% 78.8%
3594572 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.06e-01 91.0% 67.7%
3774525 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 44.0 3.24e-01 71.6% 59.4%
5013117 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.73e-01 77.6% 98.5%
3388188 206.1.3.43 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF6815 0.63 47.0 3.24e-01 82.1% 28.7%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.62 51.0 4.40e-01 89.6% 81.9%
3544618 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.61 47.0 4.44e-01 88.1% 100.0%
5061113 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.60 42.0 4.51e-01 73.1% 100.0%
3707929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 3.52e-01 83.6% 100.0%
3336463 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 44.0 4.17e-01 80.6% 66.7%
3389626 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.58 44.0 4.26e-01 82.1% 86.7%
3642524 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.58 45.0 3.58e-01 82.1% 76.8%
4927852 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 3.67e-01 74.6% 87.8%
3739035 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 3.96e-01 70.1% 100.0%
5014250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.91e-01 79.1% 80.0%
3416404 5.1.4.240 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP 0.56 47.0 3.00e-01 97.0% 25.0%
3978756 3197.1.1.1 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.54 38.0 3.25e-01 76.1% 49.2%
3619859 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 42.0 3.58e-01 88.1% 99.2%
4966836 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 38.0 4.13e-01 76.1% 98.2%
4678702 3304.1.1.2 a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.54 37.0 3.07e-01 73.1% 60.0%
5020098 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 39.0 3.86e-01 79.1% 74.3%
3709549 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 40.0 3.17e-01 86.6% 87.3%
5035671 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.53 41.0 3.54e-01 83.6% 53.3%
3709343 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 37.0 3.02e-01 76.1% 42.4%
5017692 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 3.32e-01 71.6% 93.3%
3343522 3304.1.1.2 a+b two layers › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › Cellular targeting domain in sucrose synthase-1 › SUS_N 0.52 36.0 2.89e-01 73.1% 62.1%
3280978 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 38.0 3.82e-01 80.6% 75.7%
4934734 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 39.0 3.15e-01 80.6% 54.5%
3606532 2484.6.1.0 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.52 35.0 3.22e-01 73.1% 51.1%
4392916 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 38.0 2.88e-01 80.6% 65.7%
5020056 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 40.0 3.31e-01 83.6% 58.5%
4995318 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 37.0 3.15e-01 79.1% 56.3%
None 0.51 36.0 2.43e-01 74.6% 49.3%
4497266 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 39.0 3.30e-01 83.6% 60.5%
D2 medium residues 72-151
PDB
D3 medium residues 157-195
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 4.96e-01 87.2% 74.5%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 49.0 4.33e-01 100.0% 51.6%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.67 50.0 4.18e-01 87.2% 78.2%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.11e-01 84.6% 54.8%
1x9nA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.66 48.0 2.93e-01 100.0% 12.0%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.36e-01 89.7% 93.9%
2di3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 3.96e-01 82.1% 61.3%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 46.0 4.57e-01 84.6% 75.6%
7u37A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 4.08e-01 82.1% 65.1%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 4.23e-01 87.2% 57.4%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.63 53.0 4.93e-01 97.4% 84.0%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.62 48.0 3.27e-01 87.2% 79.5%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.61 52.0 3.74e-01 100.0% 89.0%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 46.0 3.56e-01 89.7% 41.3%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 44.0 4.07e-01 84.6% 70.9%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 44.0 3.44e-01 87.2% 39.6%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.71e-01 82.1% 49.4%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 42.0 2.62e-01 89.7% 92.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3171408 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.68 49.0 4.72e-01 84.6% 92.0%
4947306 4095.1.1.1 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.68 53.0 4.01e-01 89.7% 95.0%
3204020 103.1.1.1 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.66 46.0 4.46e-01 79.5% 66.7%
3232962 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.65 56.0 4.85e-01 97.4% 70.0%
4154795 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 4.64e-01 84.6% 84.4%
3277965 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 48.0 4.58e-01 87.2% 80.0%
3561589 103.1.1.51 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_SIK3 0.63 46.0 4.04e-01 100.0% 50.8%
3560167 103.1.1.51 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_SIK3 0.62 45.0 4.55e-01 100.0% 80.0%
3500577 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.60 43.0 3.57e-01 82.1% 47.5%
4031758 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 44.0 3.50e-01 87.2% 36.8%
3946162 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 43.0 4.17e-01 87.2% 86.0%