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OP596612.1__WAX24311.1__X__00058

Bact-Vir

OP596612.1__WAX24311.1__X__00058

Identity

Accession:
OP596612 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-60
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jqjD03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.83 64.0 5.47e-01 84.9% 52.3%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.79 63.0 6.43e-01 88.7% 90.4%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.70 51.0 4.72e-01 83.0% 61.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.69 46.0 3.99e-01 84.9% 43.0%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.67 58.0 5.33e-01 100.0% 88.7%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 3.76e-01 77.4% 39.8%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 45.0 4.09e-01 84.9% 53.3%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.62 42.0 3.98e-01 71.7% 89.2%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.62 54.0 3.97e-01 100.0% 39.9%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.61 52.0 4.52e-01 94.3% 90.0%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 48.0 3.59e-01 98.1% 33.7%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.61 51.0 4.78e-01 94.3% 93.9%
7ml0M01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 49.0 4.38e-01 94.3% 65.9%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.59 43.0 3.35e-01 77.4% 40.7%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 44.0 3.43e-01 88.7% 35.8%
1eo0A00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.59 50.0 4.48e-01 100.0% 72.7%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 44.0 3.86e-01 96.2% 54.0%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.57 45.0 3.00e-01 98.1% 77.3%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 49.0 3.98e-01 100.0% 54.3%
2xkrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 45.0 2.72e-01 96.2% 12.7%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.55 35.0 3.42e-01 73.6% 55.6%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 42.0 4.29e-01 100.0% 96.2%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 43.0 3.18e-01 100.0% 33.9%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.54 41.0 3.61e-01 90.6% 95.6%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.53 47.0 3.65e-01 100.0% 64.9%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.51 39.0 3.91e-01 94.3% 88.1%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 38.0 2.57e-01 79.2% 24.8%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.51 45.0 3.79e-01 100.0% 85.9%
2d9jA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 41.0 3.76e-01 100.0% 70.9%
2p0tA02 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.51 43.0 3.94e-01 100.0% 76.4%
1ki1B01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.50 45.0 2.99e-01 100.0% 55.3%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994437 148.1.3.173 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 0.89 67.0 6.28e-01 81.1% 66.2%
4998021 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.88 70.0 6.14e-01 84.9% 64.0%
5003869 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.87 66.0 6.15e-01 81.1% 66.2%
3793159 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.87 66.0 6.16e-01 83.0% 66.2%
4872403 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.87 63.0 5.87e-01 77.4% 62.1%
3987908 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.86 65.0 6.09e-01 84.9% 66.2%
3621809 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.84 73.0 6.59e-01 96.2% 71.4%
3952675 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.81 60.0 6.01e-01 81.1% 78.2%
3353941 1134.1.1.7 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 0.75 41.0 3.83e-01 73.6% 44.6%
3578178 148.1.3.5 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.73 62.0 5.34e-01 100.0% 67.8%
5051270 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 64.0 5.61e-01 100.0% 91.3%
4025289 192.29.1.197 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 0.73 52.0 4.49e-01 83.0% 48.2%
3887909 148.1.3.5 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.72 59.0 5.34e-01 94.3% 70.7%
5036290 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.72 56.0 5.62e-01 86.8% 96.4%
4609007 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.71 45.0 4.61e-01 73.6% 68.0%
3163894 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 51.0 3.37e-01 79.2% 53.0%
3219558 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 54.0 4.96e-01 94.3% 72.0%
4585171 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.67 52.0 5.23e-01 92.5% 94.5%
5078782 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 56.0 5.30e-01 98.1% 98.5%
3671176 4230.1.1.6 alpha arrays › DnaD domain › DnaD domain › DnaD domain › Init_tRNA_PT 0.66 45.0 3.74e-01 73.6% 78.0%
4604224 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.65 46.0 3.17e-01 77.4% 21.3%
3229656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.06e-01 84.9% 89.3%
1693527 3009.2.1.0 alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain 0.64 52.0 4.94e-01 98.1% 77.9%
4876615 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.64 55.0 3.36e-01 100.0% 79.0%
3401996 103.4.1.6 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 0.61 52.0 4.90e-01 100.0% 98.5%
4821793 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.61 52.0 5.18e-01 100.0% 96.3%
3750083 142.1.1.17 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SPATIAL 0.60 49.0 4.78e-01 98.1% 98.3%
3459209 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.58 52.0 5.00e-01 100.0% 98.3%
4965039 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.57 49.0 3.23e-01 100.0% 25.7%
3193842 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.56 44.0 3.29e-01 84.9% 47.2%
5018716 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.55 38.0 3.42e-01 71.7% 71.4%
3394510 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.54 43.0 3.81e-01 86.8% 67.5%
3257185 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 38.0 2.37e-01 77.4% 13.3%
3248244 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.52 39.0 3.68e-01 88.7% 67.1%
5048820 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.50 43.0 2.81e-01 100.0% 62.7%
D2 high residues 66-194
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 36.0 4.12e-01 96.1% 84.9%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 34.0 4.17e-01 96.1% 92.8%
2rinA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 34.0 3.10e-01 75.2% 44.4%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.14e-01 81.4% 85.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.55 33.0 3.54e-01 76.7% 68.5%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 4.14e-01 94.6% 89.2%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.53 33.0 3.80e-01 74.4% 89.7%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 30.0 3.28e-01 90.7% 66.1%
1zbmA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 29.0 2.65e-01 73.6% 39.5%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.81e-01 99.2% 80.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988082 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 38.0 4.93e-01 98.4% 100.0%
3941591 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 42.0 4.99e-01 99.2% 98.8%
5036586 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 42.0 5.01e-01 100.0% 100.0%
3962442 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 40.0 4.06e-01 73.6% 63.1%
3743308 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 5.03e-01 74.4% 100.0%
3797719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 4.22e-01 97.7% 73.0%
4973869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 38.0 4.39e-01 96.9% 87.8%
5059914 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 40.0 4.44e-01 99.2% 85.0%
3788427 101.1.2.207 alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.60 45.0 5.04e-01 80.6% 100.0%
4962053 2008.1.1.108 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 0.59 46.0 3.76e-01 81.4% 61.3%
None 0.59 37.0 2.66e-01 100.0% 21.9%
4978533 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 43.0 4.30e-01 100.0% 72.6%
3250041 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.59 43.0 3.59e-01 81.4% 44.0%
4997255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 4.39e-01 98.4% 88.0%
5016560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 4.48e-01 100.0% 92.6%
3586609 101.1.2.278 alpha arrays › HTH › HTH › winged helix domain › CNDH2_C 0.57 37.0 3.92e-01 99.2% 72.3%
3378826 7523.1.1.10 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.57 35.0 3.41e-01 73.6% 55.0%
None 0.56 35.0 2.53e-01 94.6% 20.8%
4011031 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 39.0 3.80e-01 99.2% 65.0%
4404596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.73e-01 96.1% 66.2%
4993554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.62e-01 100.0% 61.4%
3738674 101.1.2.207 alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.55 43.0 4.61e-01 81.4% 96.4%
4940432 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 4.34e-01 72.9% 97.8%
145615 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 42.0 4.07e-01 81.4% 82.4%
3181301 101.1.2.569 alpha arrays › HTH › HTH › winged helix domain › PF28722 0.54 45.0 4.34e-01 89.1% 85.5%
3200375 101.1.2.569 alpha arrays › HTH › HTH › winged helix domain › PF28722 0.54 45.0 3.51e-01 89.9% 42.9%
3280466 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 37.0 3.29e-01 97.7% 48.4%
3281879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 37.0 3.30e-01 97.7% 51.1%
3484758 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.53 37.0 3.51e-01 94.6% 58.1%
3727442 101.1.2.569 alpha arrays › HTH › HTH › winged helix domain › PF28722 0.53 45.0 4.58e-01 91.5% 97.6%
4503821 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.52 26.0 3.48e-01 87.6% 88.6%
5006152 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 32.0 3.03e-01 97.7% 50.6%
4071063 7523.1.1.10 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.50 31.0 3.11e-01 73.6% 57.7%