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OP596613.1__WAX24327.1__X__00014

Bact-Vir

OP596613.1__WAX24327.1__X__00014

Identity

Accession:
OP596613 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bradyrhizobium_phage_ppBeUSDA76-1

TaxID: 3003363

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-102
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4e6zA01 3.40.1350.100 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.69 61.0 5.16e-01 100.0% 66.1%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.60 49.0 3.96e-01 92.3% 69.7%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.59 48.0 3.60e-01 92.3% 85.1%
1qm9A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 46.0 4.15e-01 98.5% 93.9%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.55 43.0 4.02e-01 86.2% 100.0%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 44.0 4.23e-01 98.5% 91.5%
2byeA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 42.0 3.71e-01 93.8% 56.4%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 4.10e-01 96.9% 72.3%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.53 41.0 3.87e-01 89.2% 100.0%
3bzcA02 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.51 41.0 2.79e-01 95.4% 22.7%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 39.0 3.71e-01 87.7% 72.2%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1178361 3397.1.1.0 ↗ a+b complex topology › Tic22 › Tic22 › Tic22 0.69 61.0 5.44e-01 100.0% 77.4%
3839740 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.65 54.0 4.17e-01 90.8% 98.6%
3994701 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 49.0 4.64e-01 87.7% 100.0%
1002524 358.3.1.0 ↗ a+b complex topology › SRCR-like › Putative uncharacterized protein TTHA0547 › Putative uncharacterized protein TTHA0547 0.62 53.0 4.63e-01 95.4% 91.1%
3859590 386.1.1.248 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZNF592 0.61 40.0 4.43e-01 89.2% 88.0%
5014684 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 43.0 4.52e-01 87.7% 86.2%
3976410 3115.1.1.11 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Exonuc_VIII 0.56 44.0 4.10e-01 95.4% 68.2%
2507517 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.56 44.0 4.12e-01 89.2% 96.4%
5082628 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.56 43.0 3.85e-01 89.2% 100.0%
4962205 302.4.1.0 ↗ a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.54 42.0 3.54e-01 86.2% 80.0%
3689828 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 40.0 3.64e-01 90.8% 93.7%